# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mkmA 249 2.14e-28 a.4.5.33,d.110.2.2 79242,79243 2g7uA 257 7.60e-27 1yspA 181 2.48e-21 1tf1A 198 1.39e-20 d.110.2.2 106826 1ysqA 193 1.28e-19 1ulyA 192 9.62e-04 2fbhA 146 2.48e-03 2a61A 145 6.73e-03 1sfxA 109 8.22e-03 a.4.5.50 105505 1on2A 142 1.62e-02 a.4.5.24,a.76.1.1 87103,87104 2b0lA 102 1.87e-02 1r1tA 122 2.19e-02 a.4.5.5 104769 1lnwA 147 3.12e-02 a.4.5.28 78104 1u2wA 122 3.59e-02 2ethA 154 4.73e-02 2fxaA 207 5.39e-02 1r1uA 106 8.73e-02 a.4.5.5 104771 1jgsA 138 1.06e-01 a.4.5.28 66683 1qzzA 374 1.10e-01 a.4.5.29,c.66.1.12 96719,96720 2fnaA 357 1.26e-01 1h1yA 228 1.94e-01 c.1.2.2 76506 1fp2A 352 1.98e-01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1qbjA 81 2.17e-01 1qbjA a.4.5.19 16155 1lj9A 144 3.04e-01 a.4.5.28 78035 1bia 321 3.05e-01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1j75A 67 4.06e-01 a.4.5.19 62673 1mzbA 136 4.27e-01 a.4.5.42 91497 1z91A 147 4.38e-01 1y0uA 96 5.93e-01 1lvaA 258 5.93e-01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2fu4A 83 5.98e-01 1r7jA 95 7.03e-01 a.4.5.49 104836 2a2cA 478 8.79e-01 2fbiA 142 9.65e-01 1hw5A 210 9.67e-01 2cgpA a.4.5.4,b.82.3.2 16098,28137 2gauA 232 1.02e+00 1vd5A 377 1.22e+00 a.102.1.7 108518 1p4xA 250 1.25e+00 a.4.5.28,a.4.5.28 87784,87785 1ub9A 100 1.47e+00 a.4.5.28 99159 1izmA 184 1.53e+00 a.199.1.1 90725 2fv1A 377 2.24e+00 2f2eA 146 2.25e+00 2fx0A 201 2.36e+00 1zarA 282 3.25e+00 1hw1A 239 3.37e+00 1e2xA a.4.5.6,a.78.1.1 16111,18441 1xd7A 145 3.81e+00 a.4.5.55 109566 2af4C 333 4.08e+00 1qtqA 553 5.03e+00 1gtrA b.53.1.2,c.26.1.1 26940,31579 1ldjA 760 5.56e+00 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 2cfxA 144 6.08e+00 1jhfA 202 6.11e+00 a.4.5.2,b.87.1.1 63057,63058 1sfuA 75 6.11e+00 a.4.5.19 105503 1yljA 263 6.75e+00 1orjA 130 6.77e+00 a.24.19.1 93456 1jkxA 212 6.83e+00 c.65.1.1 66813 1ym5A 300 7.07e+00 1ys7A 233 7.15e+00 1vi9A 299 7.91e+00 c.72.1.5 100750 1xn7A 78 7.92e+00 1oyzA 280 8.18e+00 a.118.1.16 93775 1p4kA 295 8.49e+00 d.153.1.5 87772 1bjaA 95 8.78e+00 1bjaA a.4.5.9 16122 2c12A 439 9.16e+00 1oxxK 353 9.40e+00 b.40.6.3,c.37.1.12 93715,93716 1svdM 110 9.91e+00 1ykdA 398 1.08e+01 1pq7A 224 1.10e+01 b.47.1.2 95002 2awpA 198 1.11e+01 1je8A 82 1.14e+01 a.4.6.2 77108 1bueA 265 1.15e+01 1btl e.3.1.1 42727 1b8oA 284 1.16e+01 1b8oA c.56.2.1 33762 1jc4A 148 1.16e+01 1jc4A d.32.1.4 62863 1f5mA 180 1.18e+01 1f5mB d.110.2.1 40895 1ei5A 520 1.33e+01 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1twdA 256 1.35e+01 c.1.30.1 107397 2tct 207 1.35e+01 2tct a.4.1.9,a.121.1.1 16063,19240 1stzA 338 1.37e+01 a.4.5.51,d.110.2.3 106009,106010 1tffA 234 1.44e+01 d.3.1.11 106854 1x42A 232 1.45e+01 2napA 723 1.46e+01 2napA b.52.2.2,c.81.1.1 26926,35334 1sjiA 350 1.51e+01 1q7lA 198 1.52e+01 c.56.5.4 96044 1rhcA 330 1.53e+01 c.1.16.3 97468 2apjA 260 1.54e+01 2cw8A 537 1.59e+01 2cunA 410 1.61e+01 1in4A 334 1.62e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1bg2 325 1.63e+01 1bg2 c.37.1.9 32189 1e6wA 260 1.65e+01 1e6wA c.2.1.2 59326 2bgcA 238 1.72e+01 1mqeA 207 1.81e+01 d.113.1.1 91394 2cglA 489 1.82e+01 1b0nA 111 1.84e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1ro2A 216 1.87e+01 d.264.1.2 97665 1fy7A 278 1.90e+01 1fy7A d.108.1.1 40817 1t5oA 351 2.00e+01 c.124.1.5 106459 1zljA 78 2.04e+01 1mkiA 330 2.08e+01 e.3.1.2 84994 2fswA 107 2.09e+01 1hlvA 131 2.11e+01 a.4.1.7,a.4.1.7 65854,65855 1nc5A 373 2.16e+01 a.102.1.6 85548 1qwgA 251 2.25e+01 c.1.27.1 96473 1k8kF 168 2.26e+01 d.198.2.1 68312 1tbxA 99 2.28e+01 a.4.5.48 106748 2cg4A 152 2.29e+01 1u55A 188 2.30e+01 d.278.1.1 107677 1dceB 331 2.31e+01 1dceB a.102.4.3 18872 1j1nA 492 2.34e+01 c.94.1.1 83978 1kdgA 546 2.35e+01 c.3.1.2,d.16.1.1 77337,77338 1wu7A 434 2.43e+01 2cohA 202 2.44e+01 1in6A 334 2.46e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1dpgA 485 2.47e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 2cujA 108 2.50e+01 1z7uA 112 2.50e+01 1mtyD 512 2.50e+01 1mhyD a.25.1.2 16742 1fmjA 351 2.52e+01 c.37.1.5 59879 1ug3A 339 2.56e+01 1wojA 214 2.59e+01 1sh8A 154 2.64e+01 d.38.1.5 105549 1xuqA 212 2.65e+01 1ro0A 216 2.68e+01 d.264.1.2 97664 1mw9X 592 2.68e+01 e.10.1.1 91480 1jx4A 352 2.74e+01 d.240.1.1,e.8.1.7 90378,90379 1mzhA 225 2.76e+01 c.1.10.1 79698 1v38A 78 2.77e+01 a.60.1.2 100280 1vfsA 386 2.78e+01 b.49.2.2,c.1.6.1 108584,108585 1ix9A 205 2.88e+01 a.2.11.1,d.44.1.1 76899,76900 1k78A 149 2.96e+01 a.4.1.5,a.4.1.5 68255,68256 2f9lA 199 3.01e+01 1z1dA 103 3.02e+01 2bw2A 140 3.03e+01 1v98A 140 3.06e+01 1r59O 505 3.14e+01 1gx1A 160 3.18e+01 d.79.5.1 70675 1cxc 124 3.24e+01 1ycc a.3.1.1 15890 1wj5A 120 3.25e+01 1zx4A 192 3.34e+01 2f9zC 159 3.36e+01 1tc5A 194 3.42e+01 c.110.1.1 106752 2as9A 210 3.43e+01 2d13A 227 3.44e+01 1wdvA 152 3.48e+01 1v7bA 185 3.48e+01 1k0eA 453 3.55e+01 d.161.1.1 67938 1ovnA 248 3.60e+01 a.71.1.1,c.47.1.7 93602,93603 1yw5A 177 3.65e+01 1lhpA 312 3.68e+01 c.72.1.5 77960 2cmxA 118 3.72e+01 2f46A 156 3.75e+01 1wycA 392 3.78e+01 1nz0A 118 3.95e+01 d.14.1.2 86433 1v7nV 163 4.02e+01 a.26.1.2 100476 1qyaA 307 4.08e+01 d.21.1.2,d.21.1.2 104653,104654 1j6wA 175 4.08e+01 1j98A d.185.1.2 62663 1sbyA 254 4.09e+01 1xkpA 246 4.09e+01 1t5bA 201 4.09e+01 c.23.5.3 106433 1w2wA 211 4.21e+01 c.124.1.5 109130 1wer 334 4.26e+01 1wer a.116.1.2 19108 1ufmA 84 4.29e+01 a.4.5.47 107816 1a8y 367 4.34e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1izcA 339 4.36e+01 c.1.12.5 83838 1oj4A 283 4.38e+01 d.14.1.5,d.58.26.5 93083,93084 1rd5A 262 4.42e+01 2abwA 227 4.49e+01 1sdjA 310 4.52e+01 d.21.1.2,d.21.1.2 98807,98808 1t1gA 364 4.53e+01 c.41.1.2 106246 2trxA 108 4.56e+01 1thx c.47.1.1 32719 1ct9A 553 4.58e+01 1ct9A c.26.2.1,d.153.1.1 31616,41834 1gegA 256 4.65e+01 1ybvA c.2.1.2 29888 2bo4A 397 4.65e+01 1cpt 412 4.67e+01 1cpt a.104.1.1 18968 2al6A 375 4.71e+01 1m4jA 142 4.76e+01 d.109.1.2 78602 1kid 203 4.84e+01 1derA c.8.5.1 30771 1w5tA 412 4.85e+01 1wehA 171 4.86e+01 1p0zA 131 4.86e+01 d.110.6.1 93882 1gefA 123 4.91e+01 1gefA c.52.1.18 60465 1uhnA 189 4.94e+01 a.39.1.5 99399 1pb6A 212 4.99e+01 a.4.1.9,a.121.1.1 88017,88018 2a2lA 145 5.03e+01 1m40A 263 5.16e+01 e.3.1.1 74437 1sd4A 126 5.31e+01 a.4.5.39 105428 1z67A 135 5.42e+01 1rktA 205 5.51e+01 a.4.1.9,a.121.1.1 97623,97624 1vrmA 325 5.51e+01 1sx5A 244 5.58e+01 c.52.1.2 99023 1meoA 209 5.65e+01 c.65.1.1 79035 1z5bA 469 5.68e+01 2cz1B 212 5.76e+01 1hq0A 295 5.76e+01 1hzgA d.194.1.1 61122 1s1dA 331 5.77e+01 b.67.3.1 98344 1nswA 105 5.94e+01 c.47.1.1 92097 1cg2A 393 5.98e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 1t33A 224 5.99e+01 a.4.1.9,a.121.1.1 106295,106296 1vk4A 298 6.00e+01 c.72.1.1 100850 1g6aA 271 6.08e+01 1btl e.3.1.1 42704 1vemA 516 6.09e+01 2fy7A 287 6.13e+01 1gk8I 140 6.16e+01 d.73.1.1 65242 1zx5A 300 6.22e+01 2b0vA 153 6.23e+01 1z47A 355 6.24e+01 2choA 716 6.25e+01 2dbbA 151 6.25e+01 2b5aA 77 6.31e+01 1umwA 237 6.31e+01 d.223.1.2,d.223.1.2 99631,99632 1s4nA 348 6.32e+01 c.68.1.16 98501 1eyhA 144 6.40e+01 1eduA a.118.9.1 19214 2esrA 177 6.45e+01 1i1qA 520 6.45e+01 1qdlA d.161.1.1 61543 1utxA 66 6.48e+01 a.35.1.3 108034 1sa3A 262 6.49e+01 c.52.1.23 105400 2h1nA 567 6.61e+01 1tf5A 844 6.65e+01 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1ir21 140 6.65e+01 1lcyA 325 6.72e+01 b.36.1.4,b.47.1.1 73834,73835 2f5gA 133 6.74e+01 1ww7A 160 6.75e+01 1z21A 112 6.92e+01 1ujpA 271 6.92e+01 c.1.2.4 99462 1n62C 288 6.93e+01 d.87.2.1,d.145.1.3 80094,80095 2c7pA 327 6.93e+01 1y0yA 353 6.95e+01 1b0uA 262 7.07e+01 1b0uA c.37.1.12 32370 2a5jA 191 7.24e+01 1m1hA 248 7.39e+01 b.114.1.1,d.58.42.1 78415,78416 1g8sA 230 7.47e+01 c.66.1.3 90507 2avdA 219 7.47e+01 2chnA 716 7.60e+01 2afaA 425 7.84e+01 1zbqA 327 7.93e+01 1i7dA 659 8.19e+01 1d6mA e.10.1.1 61886 1dkiA 371 8.20e+01 1dkiA d.3.1.1 37090 1ynpA 317 8.23e+01 1rqjA 299 8.24e+01 a.128.1.1 97744 1erv 105 8.26e+01 1erv c.47.1.1 32743 1y2kA 349 8.33e+01 1res 43 8.36e+01 1ret a.4.1.2 16023 2csbA 519 8.39e+01 1jbkA 195 8.42e+01 c.37.1.20 71631 1rwiA 270 8.50e+01 b.68.9.1 97987 2fneA 117 8.56e+01 1dwkA 156 8.58e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 1erw 105 8.61e+01 1erv c.47.1.1 32745 1i7nA 309 8.61e+01 c.30.1.5,d.142.1.3 83681,83682 1bm8 99 8.61e+01 1bm8 d.34.1.1 38528 1ni9A 338 8.64e+01 e.7.1.2 85739 1g291 372 8.65e+01 1g291 1io0A 185 8.68e+01 c.10.1.1 76753 1xr4A 509 8.73e+01 1t1uA 639 8.81e+01 1kkhA 317 8.85e+01 d.14.1.5,d.58.26.3 72645,72646 2givA 295 8.89e+01 1uedA 406 8.90e+01 a.104.1.1 99256 1xphA 150 8.98e+01