# TARGET T0381 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0381.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 95 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.035 0.042 0.002 0.013 0.195 0.714 2 T 0.061 0.231 0.003 0.026 0.297 0.382 3 A 0.036 0.022 0.004 0.024 0.352 0.562 4 T 0.016 0.011 0.005 0.044 0.423 0.501 5 E 0.033 0.024 0.005 0.044 0.299 0.597 6 P 0.039 0.023 0.007 0.115 0.168 0.649 7 T 0.022 0.009 0.015 0.147 0.185 0.622 8 E 0.011 0.007 0.039 0.194 0.308 0.441 9 K 0.009 0.008 0.039 0.214 0.328 0.401 10 I 0.005 0.006 0.059 0.231 0.389 0.309 11 L 0.003 0.010 0.031 0.184 0.440 0.331 12 P 0.001 0.003 0.024 0.149 0.429 0.394 13 S 0.001 0.002 0.007 0.162 0.223 0.606 14 P 0.001 0.001 0.011 0.832 0.093 0.064 15 D 0.001 0.001 0.010 0.895 0.060 0.033 16 Y 0.001 0.001 0.007 0.963 0.017 0.012 17 V 0.001 0.001 0.002 0.993 0.003 0.001 18 Q 0.001 0.001 0.002 0.994 0.003 0.001 19 S 0.001 0.001 0.002 0.994 0.003 0.001 20 L 0.001 0.001 0.001 0.996 0.001 0.001 21 A 0.001 0.001 0.001 0.995 0.002 0.001 22 R 0.001 0.001 0.001 0.990 0.003 0.006 23 G 0.002 0.001 0.001 0.952 0.009 0.035 24 L 0.005 0.001 0.001 0.973 0.006 0.014 25 A 0.008 0.001 0.002 0.978 0.005 0.007 26 V 0.006 0.001 0.003 0.984 0.004 0.003 27 I 0.009 0.001 0.007 0.971 0.007 0.005 28 R 0.009 0.001 0.009 0.962 0.009 0.010 29 C 0.009 0.004 0.010 0.914 0.023 0.040 30 F 0.012 0.017 0.005 0.463 0.085 0.418 31 D 0.004 0.010 0.005 0.049 0.509 0.423 32 H 0.001 0.002 0.060 0.155 0.685 0.097 33 R 0.002 0.003 0.083 0.092 0.776 0.045 34 N 0.005 0.010 0.120 0.064 0.762 0.039 35 Q 0.030 0.014 0.082 0.094 0.484 0.296 36 R 0.048 0.038 0.062 0.073 0.405 0.374 37 R 0.052 0.036 0.019 0.053 0.315 0.526 38 T 0.036 0.038 0.003 0.058 0.089 0.775 39 L 0.001 0.001 0.006 0.975 0.012 0.007 40 S 0.001 0.001 0.002 0.991 0.006 0.001 41 D 0.001 0.001 0.001 0.991 0.007 0.001 42 V 0.001 0.001 0.001 0.993 0.005 0.001 43 A 0.001 0.001 0.001 0.993 0.004 0.001 44 R 0.001 0.001 0.005 0.986 0.007 0.002 45 A 0.001 0.001 0.007 0.982 0.007 0.004 46 T 0.001 0.001 0.006 0.913 0.020 0.061 47 D 0.001 0.001 0.001 0.010 0.034 0.955 48 L 0.001 0.002 0.001 0.003 0.056 0.938 49 T 0.002 0.004 0.001 0.011 0.055 0.927 50 R 0.001 0.001 0.012 0.950 0.015 0.021 51 A 0.001 0.001 0.006 0.984 0.006 0.004 52 T 0.001 0.001 0.004 0.993 0.001 0.001 53 A 0.001 0.001 0.001 0.999 0.001 0.001 54 R 0.001 0.001 0.001 0.999 0.001 0.001 55 R 0.001 0.001 0.001 0.999 0.001 0.001 56 F 0.001 0.001 0.001 0.999 0.001 0.001 57 L 0.001 0.001 0.001 0.999 0.001 0.001 58 L 0.001 0.001 0.001 0.999 0.001 0.001 59 T 0.001 0.001 0.001 0.999 0.001 0.001 60 L 0.001 0.001 0.001 0.998 0.001 0.001 61 V 0.001 0.001 0.001 0.988 0.006 0.005 62 E 0.001 0.001 0.002 0.985 0.007 0.006 63 L 0.001 0.001 0.002 0.961 0.013 0.024 64 G 0.016 0.002 0.005 0.224 0.137 0.616 65 Y 0.139 0.010 0.019 0.105 0.213 0.514 66 V 0.520 0.019 0.035 0.067 0.193 0.167 67 A 0.653 0.013 0.026 0.027 0.195 0.086 68 T 0.550 0.007 0.029 0.019 0.283 0.112 69 D 0.171 0.008 0.014 0.009 0.691 0.106 70 G 0.032 0.003 0.031 0.008 0.869 0.058 71 S 0.101 0.004 0.036 0.014 0.719 0.126 72 A 0.747 0.022 0.007 0.009 0.136 0.080 73 F 0.875 0.013 0.001 0.006 0.021 0.086 74 W 0.880 0.006 0.001 0.010 0.010 0.093 75 L 0.857 0.011 0.001 0.020 0.014 0.097 76 T 0.623 0.010 0.001 0.066 0.029 0.272 77 P 0.137 0.001 0.007 0.713 0.030 0.113 78 R 0.100 0.003 0.024 0.811 0.037 0.025 79 V 0.065 0.005 0.063 0.823 0.030 0.014 80 L 0.033 0.003 0.066 0.868 0.022 0.008 81 E 0.018 0.001 0.048 0.902 0.023 0.009 82 L 0.005 0.001 0.021 0.951 0.013 0.010 83 G 0.002 0.001 0.017 0.951 0.015 0.015 84 Y 0.002 0.001 0.036 0.936 0.016 0.010 85 S 0.005 0.003 0.060 0.872 0.042 0.018 86 Y 0.006 0.001 0.069 0.836 0.066 0.022 87 L 0.017 0.002 0.095 0.684 0.150 0.052 88 S 0.010 0.004 0.110 0.612 0.180 0.084 89 S 0.011 0.011 0.060 0.423 0.214 0.281 90 L 0.007 0.005 0.008 0.069 0.136 0.775 91 S 0.001 0.001 0.001 0.003 0.022 0.974