# TARGET T0381 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0381.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 227.395 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.008 0.003 0.003 0.023 0.058 0.905 2 T 0.025 0.012 0.008 0.032 0.154 0.769 3 A 0.013 0.008 0.060 0.070 0.286 0.563 4 T 0.019 0.013 0.069 0.065 0.326 0.507 5 E 0.018 0.012 0.059 0.050 0.392 0.469 6 P 0.007 0.012 0.067 0.076 0.277 0.561 7 T 0.007 0.020 0.165 0.112 0.343 0.352 8 E 0.004 0.005 0.456 0.120 0.295 0.120 9 K 0.007 0.006 0.371 0.130 0.343 0.144 10 I 0.012 0.025 0.202 0.104 0.411 0.245 11 L 0.009 0.017 0.030 0.035 0.410 0.499 12 P 0.006 0.020 0.014 0.022 0.314 0.624 13 S 0.004 0.007 0.006 0.007 0.318 0.658 14 P 0.003 0.006 0.087 0.226 0.392 0.286 15 D 0.006 0.007 0.088 0.502 0.208 0.188 16 Y 0.002 0.002 0.039 0.900 0.034 0.023 17 V 0.003 0.001 0.005 0.954 0.015 0.022 18 Q 0.002 0.002 0.004 0.967 0.010 0.014 19 S 0.004 0.001 0.006 0.974 0.008 0.007 20 L 0.001 0.001 0.007 0.987 0.004 0.002 21 A 0.001 0.001 0.007 0.987 0.004 0.001 22 R 0.001 0.001 0.005 0.991 0.003 0.001 23 G 0.001 0.001 0.003 0.991 0.004 0.003 24 L 0.001 0.001 0.002 0.991 0.005 0.002 25 A 0.001 0.001 0.002 0.992 0.004 0.001 26 V 0.001 0.001 0.003 0.992 0.004 0.001 27 I 0.001 0.001 0.009 0.985 0.004 0.001 28 R 0.001 0.001 0.010 0.982 0.005 0.001 29 C 0.003 0.001 0.010 0.968 0.007 0.012 30 F 0.008 0.005 0.017 0.644 0.055 0.272 31 D 0.011 0.011 0.036 0.310 0.221 0.411 32 H 0.011 0.005 0.111 0.241 0.437 0.194 33 R 0.007 0.006 0.139 0.240 0.443 0.165 34 N 0.007 0.003 0.129 0.074 0.622 0.164 35 Q 0.011 0.002 0.052 0.030 0.537 0.368 36 R 0.094 0.025 0.022 0.027 0.250 0.582 37 R 0.161 0.067 0.004 0.019 0.156 0.593 38 T 0.068 0.034 0.002 0.021 0.052 0.824 39 L 0.001 0.001 0.011 0.979 0.004 0.005 40 S 0.001 0.001 0.008 0.985 0.004 0.002 41 D 0.001 0.001 0.010 0.981 0.007 0.002 42 V 0.001 0.001 0.008 0.983 0.006 0.003 43 A 0.001 0.001 0.006 0.988 0.004 0.001 44 R 0.001 0.001 0.008 0.980 0.007 0.003 45 A 0.001 0.001 0.009 0.953 0.022 0.016 46 T 0.001 0.002 0.011 0.824 0.055 0.106 47 D 0.001 0.001 0.002 0.008 0.088 0.900 48 L 0.004 0.014 0.003 0.011 0.138 0.829 49 T 0.005 0.006 0.001 0.011 0.090 0.886 50 R 0.001 0.001 0.011 0.916 0.030 0.040 51 A 0.001 0.001 0.007 0.967 0.015 0.011 52 T 0.001 0.001 0.006 0.985 0.006 0.003 53 A 0.001 0.001 0.002 0.995 0.002 0.001 54 R 0.001 0.001 0.002 0.995 0.002 0.001 55 R 0.001 0.001 0.002 0.997 0.001 0.001 56 F 0.001 0.001 0.001 0.998 0.001 0.001 57 L 0.001 0.001 0.001 0.998 0.001 0.001 58 L 0.001 0.001 0.001 0.996 0.002 0.001 59 T 0.001 0.001 0.002 0.994 0.003 0.001 60 L 0.001 0.001 0.003 0.991 0.004 0.001 61 V 0.001 0.001 0.009 0.983 0.007 0.001 62 E 0.001 0.001 0.008 0.979 0.010 0.002 63 L 0.001 0.001 0.009 0.940 0.020 0.029 64 G 0.015 0.001 0.011 0.062 0.117 0.794 65 Y 0.255 0.020 0.026 0.050 0.124 0.525 66 V 0.855 0.007 0.013 0.016 0.045 0.064 67 A 0.914 0.007 0.004 0.008 0.026 0.041 68 T 0.828 0.013 0.005 0.006 0.121 0.027 69 D 0.188 0.006 0.006 0.003 0.765 0.032 70 G 0.013 0.001 0.012 0.002 0.945 0.026 71 S 0.081 0.012 0.010 0.001 0.863 0.033 72 A 0.519 0.032 0.011 0.003 0.273 0.163 73 F 0.784 0.020 0.006 0.003 0.056 0.131 74 W 0.823 0.030 0.004 0.004 0.039 0.101 75 L 0.527 0.043 0.005 0.021 0.078 0.326 76 T 0.134 0.008 0.002 0.043 0.108 0.705 77 P 0.007 0.001 0.012 0.911 0.038 0.032 78 R 0.006 0.001 0.016 0.941 0.025 0.012 79 V 0.007 0.001 0.020 0.955 0.013 0.004 80 L 0.015 0.001 0.016 0.953 0.011 0.004 81 E 0.006 0.001 0.009 0.973 0.007 0.003 82 L 0.003 0.001 0.005 0.981 0.006 0.005 83 G 0.003 0.001 0.006 0.966 0.011 0.014 84 Y 0.002 0.001 0.022 0.949 0.018 0.008 85 S 0.002 0.001 0.025 0.944 0.021 0.008 86 Y 0.001 0.001 0.021 0.946 0.018 0.012 87 L 0.002 0.001 0.049 0.881 0.041 0.027 88 S 0.002 0.001 0.061 0.819 0.054 0.063 89 S 0.004 0.002 0.084 0.519 0.106 0.285 90 L 0.003 0.004 0.011 0.104 0.084 0.794 91 S 0.001 0.001 0.001 0.001 0.010 0.989