# TARGET T0381 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0381.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 227.395 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.006 0.958 0.001 0.001 0.003 0.001 0.001 0.002 0.015 0.003 0.004 0.009 2 T 0.001 0.015 0.930 0.001 0.003 0.006 0.001 0.001 0.002 0.014 0.010 0.006 0.013 3 A 0.001 0.015 0.699 0.005 0.016 0.018 0.001 0.001 0.002 0.131 0.091 0.006 0.016 4 T 0.001 0.014 0.552 0.001 0.017 0.021 0.001 0.001 0.002 0.268 0.096 0.016 0.011 5 E 0.001 0.012 0.678 0.001 0.011 0.013 0.001 0.001 0.002 0.231 0.035 0.005 0.011 6 P 0.001 0.028 0.736 0.001 0.022 0.027 0.001 0.001 0.002 0.102 0.063 0.004 0.014 7 T 0.001 0.034 0.483 0.002 0.150 0.089 0.001 0.001 0.002 0.096 0.120 0.007 0.016 8 E 0.001 0.016 0.236 0.002 0.379 0.109 0.001 0.001 0.001 0.118 0.122 0.006 0.010 9 K 0.001 0.018 0.266 0.001 0.298 0.140 0.001 0.001 0.002 0.105 0.144 0.007 0.016 10 I 0.001 0.048 0.351 0.001 0.113 0.120 0.001 0.001 0.004 0.174 0.157 0.005 0.025 11 L 0.001 0.019 0.643 0.001 0.010 0.025 0.001 0.001 0.002 0.221 0.066 0.008 0.005 12 P 0.001 0.010 0.658 0.001 0.010 0.025 0.001 0.001 0.001 0.140 0.151 0.001 0.004 13 S 0.001 0.008 0.712 0.001 0.008 0.029 0.001 0.001 0.001 0.199 0.041 0.001 0.001 14 P 0.001 0.004 0.172 0.001 0.102 0.348 0.001 0.001 0.001 0.176 0.197 0.001 0.001 15 D 0.001 0.011 0.083 0.001 0.107 0.438 0.001 0.001 0.002 0.097 0.258 0.001 0.002 16 Y 0.001 0.014 0.079 0.001 0.095 0.654 0.001 0.001 0.005 0.050 0.094 0.001 0.005 17 V 0.001 0.003 0.036 0.001 0.011 0.924 0.001 0.001 0.003 0.009 0.010 0.001 0.003 18 Q 0.001 0.001 0.011 0.001 0.005 0.971 0.001 0.001 0.001 0.004 0.005 0.001 0.001 19 S 0.001 0.001 0.006 0.001 0.003 0.979 0.001 0.001 0.001 0.002 0.004 0.001 0.001 20 L 0.001 0.001 0.003 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.003 0.001 0.001 21 A 0.001 0.001 0.002 0.001 0.001 0.988 0.001 0.001 0.001 0.002 0.006 0.001 0.001 22 R 0.001 0.001 0.002 0.001 0.001 0.984 0.001 0.001 0.001 0.001 0.012 0.001 0.001 23 G 0.001 0.001 0.002 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.008 0.001 0.001 24 L 0.001 0.001 0.002 0.001 0.001 0.994 0.001 0.001 0.001 0.002 0.002 0.001 0.001 25 A 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 26 V 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.004 0.001 0.001 27 I 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.008 0.001 0.001 28 R 0.001 0.001 0.001 0.001 0.004 0.958 0.001 0.001 0.001 0.001 0.035 0.001 0.001 29 C 0.001 0.001 0.004 0.001 0.013 0.911 0.001 0.001 0.001 0.004 0.068 0.001 0.001 30 F 0.001 0.003 0.048 0.001 0.021 0.775 0.001 0.001 0.002 0.048 0.102 0.001 0.002 31 D 0.001 0.012 0.145 0.001 0.056 0.492 0.001 0.001 0.003 0.071 0.212 0.002 0.005 32 H 0.001 0.003 0.101 0.001 0.084 0.464 0.001 0.001 0.001 0.085 0.256 0.001 0.004 33 R 0.001 0.005 0.157 0.001 0.103 0.322 0.001 0.001 0.001 0.110 0.296 0.002 0.002 34 N 0.001 0.004 0.169 0.001 0.131 0.162 0.001 0.001 0.001 0.117 0.411 0.001 0.002 35 Q 0.001 0.008 0.203 0.002 0.094 0.121 0.001 0.001 0.003 0.228 0.334 0.003 0.005 36 R 0.001 0.016 0.270 0.002 0.054 0.091 0.001 0.001 0.008 0.216 0.328 0.004 0.009 37 R 0.001 0.060 0.355 0.001 0.011 0.046 0.001 0.001 0.011 0.413 0.075 0.020 0.009 38 T 0.001 0.057 0.745 0.001 0.002 0.039 0.001 0.001 0.007 0.113 0.011 0.002 0.024 39 L 0.001 0.001 0.011 0.001 0.008 0.967 0.001 0.001 0.001 0.003 0.009 0.001 0.001 40 S 0.001 0.001 0.001 0.001 0.002 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 41 D 0.001 0.001 0.001 0.001 0.002 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 V 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 A 0.001 0.001 0.001 0.001 0.004 0.991 0.001 0.001 0.001 0.001 0.004 0.001 0.001 44 R 0.001 0.001 0.001 0.001 0.006 0.960 0.001 0.001 0.001 0.001 0.033 0.001 0.001 45 A 0.001 0.001 0.001 0.001 0.008 0.859 0.001 0.001 0.001 0.003 0.128 0.001 0.001 46 T 0.001 0.001 0.025 0.001 0.018 0.527 0.001 0.001 0.001 0.043 0.386 0.001 0.001 47 D 0.001 0.007 0.130 0.001 0.031 0.146 0.001 0.001 0.001 0.092 0.594 0.001 0.001 48 L 0.001 0.008 0.643 0.001 0.008 0.025 0.001 0.001 0.001 0.275 0.036 0.001 0.002 49 T 0.001 0.018 0.647 0.001 0.015 0.069 0.001 0.001 0.003 0.183 0.059 0.001 0.004 50 R 0.001 0.002 0.038 0.001 0.027 0.813 0.001 0.001 0.001 0.034 0.083 0.001 0.001 51 A 0.001 0.003 0.027 0.001 0.010 0.923 0.001 0.001 0.002 0.013 0.019 0.001 0.001 52 T 0.001 0.001 0.014 0.001 0.003 0.969 0.001 0.001 0.001 0.006 0.005 0.001 0.001 53 A 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 R 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 R 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 56 F 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 57 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 59 T 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 60 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 61 V 0.001 0.001 0.001 0.001 0.001 0.986 0.001 0.001 0.001 0.001 0.012 0.001 0.001 62 E 0.001 0.001 0.001 0.001 0.002 0.928 0.001 0.001 0.001 0.001 0.067 0.001 0.001 63 L 0.001 0.001 0.002 0.001 0.002 0.428 0.001 0.001 0.001 0.006 0.561 0.001 0.001 64 G 0.001 0.001 0.010 0.001 0.002 0.012 0.001 0.001 0.001 0.012 0.963 0.001 0.001 65 Y 0.005 0.013 0.674 0.001 0.011 0.023 0.001 0.001 0.002 0.060 0.124 0.037 0.049 66 V 0.057 0.057 0.249 0.003 0.015 0.015 0.008 0.001 0.017 0.064 0.042 0.093 0.379 67 A 0.112 0.016 0.215 0.011 0.011 0.010 0.017 0.001 0.019 0.081 0.046 0.241 0.218 68 T 0.067 0.032 0.168 0.008 0.007 0.006 0.019 0.001 0.008 0.117 0.079 0.082 0.407 69 D 0.004 0.009 0.319 0.017 0.014 0.003 0.001 0.001 0.001 0.196 0.301 0.093 0.042 70 G 0.001 0.001 0.051 0.006 0.008 0.001 0.001 0.001 0.001 0.213 0.711 0.002 0.006 71 S 0.007 0.003 0.077 0.001 0.010 0.001 0.001 0.001 0.001 0.295 0.554 0.033 0.016 72 A 0.114 0.016 0.225 0.003 0.009 0.003 0.012 0.002 0.005 0.128 0.072 0.053 0.359 73 F 0.299 0.008 0.122 0.003 0.003 0.001 0.030 0.001 0.003 0.024 0.007 0.331 0.169 74 W 0.212 0.016 0.071 0.002 0.001 0.001 0.031 0.001 0.003 0.011 0.002 0.190 0.462 75 L 0.066 0.023 0.356 0.011 0.002 0.008 0.011 0.001 0.004 0.044 0.005 0.212 0.257 76 T 0.005 0.003 0.709 0.001 0.002 0.045 0.001 0.001 0.002 0.075 0.005 0.030 0.122 77 P 0.001 0.001 0.015 0.001 0.011 0.934 0.001 0.001 0.001 0.013 0.022 0.001 0.002 78 R 0.001 0.001 0.005 0.001 0.008 0.974 0.001 0.001 0.001 0.002 0.009 0.001 0.001 79 V 0.001 0.001 0.002 0.001 0.007 0.984 0.001 0.001 0.001 0.001 0.003 0.001 0.001 80 L 0.001 0.001 0.002 0.001 0.003 0.989 0.001 0.001 0.001 0.001 0.003 0.001 0.001 81 E 0.001 0.001 0.002 0.001 0.002 0.972 0.001 0.001 0.001 0.002 0.018 0.001 0.001 82 L 0.001 0.001 0.003 0.001 0.002 0.951 0.001 0.001 0.001 0.004 0.039 0.001 0.001 83 G 0.001 0.001 0.014 0.001 0.002 0.955 0.001 0.001 0.001 0.007 0.019 0.001 0.001 84 Y 0.001 0.001 0.007 0.001 0.012 0.961 0.001 0.001 0.001 0.004 0.014 0.001 0.001 85 S 0.001 0.001 0.006 0.001 0.028 0.935 0.001 0.001 0.001 0.005 0.024 0.001 0.001 86 Y 0.001 0.001 0.007 0.001 0.044 0.905 0.001 0.001 0.001 0.005 0.035 0.001 0.001 87 L 0.001 0.003 0.016 0.001 0.072 0.784 0.001 0.001 0.001 0.012 0.107 0.001 0.003 88 S 0.001 0.002 0.028 0.001 0.096 0.524 0.001 0.001 0.001 0.023 0.323 0.002 0.001 89 S 0.001 0.001 0.055 0.001 0.078 0.313 0.001 0.001 0.001 0.053 0.497 0.001 0.001 90 L 0.001 0.007 0.628 0.001 0.016 0.058 0.001 0.001 0.001 0.225 0.062 0.001 0.002 91 S 0.001 0.003 0.916 0.001 0.014 0.009 0.001 0.001 0.001 0.034 0.022 0.001 0.001