# TARGET T0381 # Using neural net dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-n_notor2-from-empty.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 n_notor2 ) # The input amino acid frequencies were determined from # alignment T0381.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 227.395 # Pos AA G H I P A B S F J M N 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.091 0.022 0.014 0.031 0.017 0.026 0.031 0.006 0.001 0.003 0.760 2 T 0.055 0.005 0.004 0.020 0.019 0.020 0.119 0.004 0.001 0.003 0.751 3 A 0.024 0.001 0.007 0.009 0.002 0.005 0.019 0.001 0.001 0.002 0.930 4 T 0.023 0.001 0.001 0.028 0.007 0.016 0.207 0.001 0.001 0.003 0.714 5 E 0.187 0.001 0.003 0.020 0.004 0.006 0.093 0.001 0.001 0.007 0.679 6 P 0.008 0.001 0.001 0.005 0.001 0.001 0.026 0.001 0.001 0.001 0.956 7 T 0.041 0.003 0.001 0.037 0.011 0.021 0.227 0.001 0.001 0.005 0.655 8 E 0.212 0.021 0.001 0.030 0.007 0.015 0.103 0.001 0.001 0.008 0.603 9 K 0.248 0.088 0.001 0.028 0.018 0.020 0.082 0.003 0.001 0.005 0.507 10 I 0.467 0.080 0.006 0.023 0.009 0.019 0.056 0.004 0.001 0.007 0.329 11 L 0.265 0.055 0.008 0.041 0.023 0.047 0.078 0.010 0.001 0.003 0.470 12 P 0.017 0.003 0.006 0.008 0.002 0.004 0.006 0.001 0.001 0.001 0.952 13 S 0.073 0.005 0.003 0.034 0.016 0.037 0.148 0.002 0.001 0.003 0.678 14 P 0.014 0.001 0.001 0.003 0.001 0.001 0.007 0.001 0.001 0.001 0.973 15 D 0.024 0.004 0.001 0.019 0.004 0.007 0.238 0.001 0.001 0.002 0.701 16 Y 0.344 0.013 0.002 0.020 0.003 0.006 0.216 0.001 0.001 0.014 0.381 17 V 0.115 0.223 0.002 0.054 0.005 0.013 0.189 0.001 0.001 0.004 0.395 18 Q 0.036 0.293 0.001 0.021 0.005 0.010 0.165 0.001 0.001 0.002 0.466 19 S 0.029 0.503 0.001 0.003 0.001 0.002 0.055 0.001 0.001 0.001 0.405 20 L 0.015 0.830 0.001 0.001 0.001 0.001 0.015 0.001 0.001 0.001 0.134 21 A 0.020 0.904 0.001 0.001 0.001 0.001 0.020 0.001 0.001 0.002 0.050 22 R 0.015 0.921 0.001 0.001 0.001 0.001 0.010 0.003 0.001 0.001 0.049 23 G 0.019 0.953 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.024 24 L 0.006 0.987 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 25 A 0.002 0.972 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.021 26 V 0.007 0.984 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.006 27 I 0.004 0.992 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 28 R 0.003 0.990 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.004 29 C 0.016 0.966 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.011 30 F 0.025 0.957 0.002 0.001 0.001 0.001 0.001 0.009 0.001 0.001 0.005 31 D 0.056 0.843 0.022 0.001 0.001 0.002 0.003 0.025 0.001 0.001 0.046 32 H 0.085 0.618 0.037 0.004 0.003 0.004 0.008 0.050 0.001 0.001 0.191 33 R 0.252 0.398 0.016 0.005 0.003 0.004 0.024 0.036 0.001 0.003 0.261 34 N 0.137 0.165 0.072 0.009 0.005 0.006 0.086 0.022 0.001 0.007 0.492 35 Q 0.108 0.143 0.034 0.013 0.006 0.007 0.115 0.010 0.001 0.004 0.560 36 R 0.238 0.113 0.014 0.011 0.002 0.005 0.097 0.007 0.001 0.008 0.504 37 R 0.149 0.166 0.021 0.031 0.010 0.014 0.120 0.005 0.001 0.007 0.477 38 T 0.130 0.098 0.008 0.012 0.006 0.009 0.269 0.005 0.001 0.005 0.459 39 L 0.053 0.192 0.019 0.023 0.007 0.015 0.055 0.003 0.001 0.004 0.628 40 S 0.018 0.341 0.002 0.010 0.009 0.013 0.124 0.002 0.001 0.004 0.476 41 D 0.021 0.332 0.001 0.002 0.004 0.007 0.344 0.004 0.001 0.011 0.274 42 V 0.014 0.898 0.001 0.002 0.002 0.002 0.008 0.002 0.001 0.001 0.072 43 A 0.015 0.941 0.001 0.002 0.002 0.007 0.016 0.006 0.001 0.002 0.010 44 R 0.009 0.971 0.001 0.001 0.001 0.004 0.001 0.006 0.001 0.001 0.007 45 A 0.030 0.939 0.001 0.001 0.001 0.001 0.001 0.016 0.001 0.001 0.013 46 T 0.063 0.867 0.003 0.001 0.001 0.001 0.001 0.056 0.001 0.001 0.010 47 D 0.349 0.308 0.039 0.001 0.001 0.001 0.011 0.153 0.001 0.003 0.134 48 L 0.022 0.026 0.882 0.002 0.001 0.001 0.014 0.003 0.001 0.001 0.050 49 T 0.033 0.031 0.010 0.016 0.002 0.004 0.147 0.007 0.001 0.002 0.749 50 R 0.076 0.020 0.016 0.011 0.001 0.001 0.047 0.001 0.001 0.004 0.823 51 A 0.032 0.086 0.002 0.010 0.001 0.002 0.178 0.001 0.001 0.003 0.684 52 T 0.065 0.151 0.001 0.008 0.003 0.002 0.370 0.003 0.001 0.008 0.389 53 A 0.026 0.787 0.001 0.004 0.001 0.002 0.033 0.001 0.001 0.002 0.142 54 R 0.006 0.949 0.001 0.002 0.002 0.003 0.010 0.002 0.001 0.001 0.025 55 R 0.010 0.954 0.001 0.001 0.001 0.001 0.007 0.002 0.001 0.001 0.026 56 F 0.004 0.986 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.007 57 L 0.003 0.995 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 L 0.004 0.989 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.003 59 T 0.015 0.968 0.002 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.011 60 L 0.021 0.953 0.002 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.019 61 V 0.009 0.968 0.002 0.001 0.001 0.002 0.001 0.005 0.001 0.001 0.010 62 E 0.012 0.892 0.016 0.001 0.003 0.009 0.008 0.014 0.001 0.001 0.045 63 L 0.071 0.820 0.002 0.004 0.006 0.008 0.003 0.040 0.001 0.001 0.045 64 G 0.284 0.450 0.016 0.013 0.015 0.013 0.005 0.099 0.001 0.003 0.102 65 Y 0.090 0.144 0.481 0.012 0.032 0.022 0.018 0.013 0.001 0.002 0.187 66 V 0.017 0.047 0.045 0.072 0.177 0.163 0.027 0.015 0.001 0.001 0.435 67 A 0.038 0.016 0.006 0.124 0.187 0.294 0.042 0.006 0.001 0.003 0.283 68 T 0.026 0.011 0.005 0.065 0.134 0.158 0.086 0.003 0.001 0.003 0.508 69 D 0.020 0.007 0.001 0.053 0.064 0.110 0.191 0.002 0.001 0.008 0.544 70 G 0.058 0.002 0.002 0.020 0.012 0.018 0.176 0.001 0.001 0.027 0.684 71 S 0.221 0.004 0.003 0.018 0.020 0.013 0.372 0.001 0.001 0.058 0.290 72 A 0.175 0.006 0.009 0.030 0.022 0.019 0.293 0.001 0.001 0.027 0.418 73 F 0.078 0.010 0.012 0.053 0.061 0.104 0.296 0.001 0.001 0.013 0.372 74 W 0.034 0.006 0.003 0.119 0.150 0.264 0.229 0.001 0.001 0.005 0.188 75 L 0.008 0.004 0.003 0.043 0.059 0.136 0.063 0.001 0.001 0.002 0.682 76 T 0.009 0.004 0.001 0.083 0.134 0.333 0.196 0.001 0.001 0.003 0.236 77 P 0.001 0.001 0.001 0.003 0.001 0.002 0.007 0.001 0.001 0.001 0.987 78 R 0.003 0.004 0.001 0.030 0.017 0.031 0.455 0.001 0.001 0.005 0.453 79 V 0.105 0.053 0.001 0.025 0.011 0.035 0.433 0.001 0.001 0.019 0.316 80 L 0.036 0.811 0.001 0.034 0.015 0.013 0.015 0.002 0.001 0.001 0.072 81 E 0.037 0.858 0.001 0.001 0.001 0.004 0.014 0.001 0.001 0.002 0.080 82 L 0.039 0.890 0.002 0.002 0.003 0.005 0.004 0.007 0.001 0.001 0.049 83 G 0.075 0.858 0.004 0.002 0.002 0.003 0.003 0.013 0.001 0.001 0.040 84 Y 0.023 0.834 0.036 0.002 0.003 0.006 0.008 0.010 0.001 0.001 0.078 85 S 0.026 0.663 0.005 0.005 0.010 0.008 0.012 0.025 0.001 0.001 0.245 86 Y 0.140 0.697 0.008 0.005 0.004 0.006 0.017 0.020 0.001 0.002 0.101 87 L 0.060 0.784 0.013 0.010 0.012 0.019 0.013 0.017 0.001 0.002 0.069 88 S 0.061 0.706 0.014 0.009 0.010 0.015 0.030 0.018 0.001 0.002 0.134 89 S 0.255 0.374 0.009 0.009 0.011 0.013 0.035 0.079 0.001 0.005 0.210 90 L 0.324 0.267 0.065 0.017 0.013 0.014 0.053 0.040 0.001 0.011 0.196 91 S 0.074 0.084 0.044 0.015 0.012 0.012 0.320 0.022 0.001 0.011 0.406