# TARGET T0381 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0381.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 227.395 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.002 0.001 0.001 0.001 0.001 0.001 0.995 2 T 0.014 0.022 0.003 0.012 0.004 0.014 0.931 3 A 0.016 0.012 0.018 0.036 0.121 0.075 0.722 4 T 0.019 0.009 0.027 0.052 0.151 0.116 0.625 5 E 0.018 0.009 0.017 0.052 0.237 0.029 0.639 6 P 0.013 0.009 0.023 0.082 0.066 0.051 0.755 7 T 0.014 0.015 0.118 0.170 0.081 0.110 0.493 8 E 0.009 0.019 0.242 0.237 0.113 0.110 0.270 9 K 0.014 0.010 0.228 0.205 0.114 0.185 0.243 10 I 0.019 0.021 0.093 0.115 0.190 0.178 0.384 11 L 0.013 0.022 0.022 0.019 0.229 0.076 0.619 12 P 0.011 0.019 0.017 0.018 0.261 0.160 0.514 13 S 0.006 0.006 0.006 0.009 0.183 0.023 0.767 14 P 0.002 0.002 0.150 0.303 0.097 0.358 0.089 15 D 0.002 0.003 0.157 0.366 0.057 0.368 0.047 16 Y 0.004 0.005 0.108 0.692 0.035 0.086 0.070 17 V 0.004 0.004 0.015 0.897 0.012 0.017 0.051 18 Q 0.006 0.002 0.018 0.913 0.013 0.022 0.026 19 S 0.004 0.001 0.018 0.947 0.005 0.017 0.008 20 L 0.001 0.001 0.002 0.986 0.002 0.004 0.003 21 A 0.001 0.001 0.001 0.993 0.001 0.003 0.001 22 R 0.001 0.001 0.001 0.990 0.001 0.008 0.001 23 G 0.001 0.001 0.001 0.995 0.001 0.003 0.001 24 L 0.001 0.001 0.001 0.998 0.001 0.001 0.001 25 A 0.001 0.001 0.001 0.998 0.001 0.002 0.001 26 V 0.001 0.001 0.001 0.996 0.001 0.003 0.001 27 I 0.001 0.001 0.001 0.992 0.001 0.006 0.001 28 R 0.001 0.001 0.001 0.965 0.001 0.032 0.001 29 C 0.001 0.001 0.006 0.898 0.002 0.087 0.007 30 F 0.003 0.005 0.023 0.832 0.025 0.076 0.037 31 D 0.005 0.004 0.064 0.567 0.046 0.181 0.132 32 H 0.004 0.002 0.108 0.442 0.083 0.293 0.068 33 R 0.006 0.004 0.087 0.256 0.160 0.341 0.146 34 N 0.009 0.005 0.101 0.077 0.247 0.306 0.255 35 Q 0.024 0.007 0.086 0.077 0.297 0.259 0.250 36 R 0.062 0.027 0.071 0.058 0.180 0.216 0.385 37 R 0.116 0.079 0.010 0.028 0.204 0.024 0.539 38 T 0.077 0.053 0.003 0.025 0.039 0.008 0.794 39 L 0.001 0.001 0.022 0.968 0.001 0.004 0.005 40 S 0.001 0.001 0.014 0.982 0.001 0.002 0.001 41 D 0.001 0.001 0.003 0.995 0.001 0.001 0.001 42 V 0.001 0.001 0.001 0.998 0.001 0.001 0.001 43 A 0.001 0.001 0.001 0.995 0.001 0.003 0.001 44 R 0.001 0.001 0.001 0.984 0.001 0.015 0.001 45 A 0.001 0.001 0.003 0.911 0.003 0.078 0.004 46 T 0.001 0.002 0.006 0.461 0.026 0.486 0.020 47 D 0.001 0.001 0.006 0.043 0.053 0.799 0.098 48 L 0.002 0.006 0.004 0.010 0.161 0.014 0.803 49 T 0.005 0.007 0.009 0.029 0.050 0.013 0.887 50 R 0.003 0.002 0.038 0.787 0.070 0.060 0.040 51 A 0.001 0.001 0.014 0.943 0.011 0.016 0.013 52 T 0.001 0.001 0.006 0.978 0.002 0.006 0.006 53 A 0.001 0.001 0.001 0.995 0.001 0.001 0.002 54 R 0.001 0.001 0.001 0.997 0.001 0.001 0.001 55 R 0.001 0.001 0.001 0.997 0.001 0.002 0.001 56 F 0.001 0.001 0.001 0.995 0.001 0.003 0.001 57 L 0.001 0.001 0.001 0.997 0.001 0.002 0.001 58 L 0.001 0.001 0.001 0.996 0.001 0.003 0.001 59 T 0.001 0.001 0.001 0.997 0.001 0.003 0.001 60 L 0.001 0.001 0.001 0.994 0.001 0.004 0.001 61 V 0.001 0.001 0.002 0.986 0.001 0.009 0.001 62 E 0.001 0.001 0.004 0.928 0.003 0.063 0.002 63 L 0.001 0.001 0.007 0.287 0.008 0.690 0.006 64 G 0.003 0.001 0.003 0.020 0.031 0.910 0.032 65 Y 0.186 0.012 0.018 0.025 0.171 0.060 0.527 66 V 0.765 0.020 0.011 0.015 0.038 0.008 0.144 67 A 0.775 0.012 0.006 0.010 0.030 0.009 0.159 68 T 0.789 0.037 0.004 0.006 0.035 0.009 0.120 69 D 0.341 0.008 0.009 0.004 0.117 0.089 0.433 70 G 0.016 0.001 0.026 0.003 0.171 0.715 0.068 71 S 0.040 0.002 0.039 0.006 0.220 0.568 0.125 72 A 0.281 0.023 0.039 0.008 0.202 0.170 0.277 73 F 0.777 0.028 0.006 0.005 0.034 0.027 0.122 74 W 0.811 0.020 0.005 0.007 0.030 0.014 0.113 75 L 0.631 0.055 0.002 0.010 0.054 0.006 0.242 76 T 0.111 0.010 0.002 0.026 0.043 0.006 0.803 77 P 0.001 0.001 0.023 0.937 0.007 0.015 0.016 78 R 0.001 0.001 0.017 0.971 0.002 0.008 0.002 79 V 0.001 0.001 0.018 0.977 0.001 0.004 0.001 80 L 0.001 0.001 0.005 0.987 0.001 0.006 0.001 81 E 0.001 0.001 0.003 0.975 0.001 0.020 0.001 82 L 0.001 0.001 0.004 0.917 0.001 0.075 0.002 83 G 0.001 0.001 0.005 0.934 0.003 0.044 0.013 84 Y 0.001 0.001 0.015 0.951 0.005 0.015 0.012 85 S 0.001 0.001 0.042 0.916 0.004 0.029 0.007 86 Y 0.001 0.001 0.049 0.878 0.004 0.061 0.007 87 L 0.002 0.002 0.081 0.823 0.011 0.068 0.013 88 S 0.003 0.002 0.095 0.640 0.017 0.219 0.025 89 S 0.002 0.001 0.057 0.488 0.032 0.376 0.044 90 L 0.006 0.008 0.018 0.159 0.187 0.099 0.525 91 S 0.004 0.003 0.015 0.030 0.040 0.046 0.862