# TARGET T0381 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0381.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 227.395 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.105 0.364 0.325 0.056 0.072 0.027 0.012 0.005 0.029 0.005 0.001 2 T 0.077 0.234 0.501 0.033 0.051 0.052 0.012 0.002 0.030 0.006 0.001 3 A 0.312 0.128 0.362 0.104 0.025 0.035 0.010 0.005 0.010 0.004 0.003 4 T 0.238 0.270 0.269 0.084 0.056 0.033 0.008 0.003 0.034 0.004 0.001 5 E 0.080 0.119 0.631 0.006 0.024 0.032 0.015 0.001 0.083 0.006 0.003 6 P 0.313 0.008 0.544 0.026 0.001 0.032 0.001 0.001 0.002 0.001 0.073 7 T 0.428 0.098 0.250 0.125 0.028 0.030 0.009 0.010 0.014 0.005 0.002 8 E 0.432 0.121 0.204 0.102 0.052 0.020 0.026 0.009 0.017 0.016 0.001 9 K 0.368 0.114 0.219 0.193 0.031 0.025 0.027 0.007 0.012 0.002 0.002 10 I 0.205 0.190 0.295 0.194 0.019 0.049 0.017 0.004 0.025 0.001 0.001 11 L 0.044 0.332 0.429 0.002 0.031 0.026 0.011 0.001 0.121 0.002 0.001 12 P 0.115 0.005 0.709 0.031 0.001 0.063 0.001 0.001 0.001 0.001 0.075 13 S 0.037 0.108 0.665 0.003 0.045 0.026 0.007 0.001 0.099 0.007 0.001 14 P 0.823 0.001 0.107 0.028 0.001 0.007 0.001 0.001 0.001 0.001 0.032 15 D 0.623 0.016 0.057 0.225 0.012 0.021 0.022 0.013 0.007 0.004 0.001 16 Y 0.813 0.013 0.023 0.113 0.007 0.006 0.005 0.014 0.003 0.004 0.001 17 V 0.930 0.014 0.029 0.012 0.001 0.009 0.001 0.001 0.002 0.001 0.001 18 Q 0.993 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 S 0.988 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 L 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 A 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 22 R 0.992 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 23 G 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 24 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 V 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 I 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 R 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 C 0.969 0.001 0.001 0.029 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 F 0.800 0.005 0.009 0.176 0.001 0.005 0.002 0.001 0.002 0.001 0.001 31 D 0.642 0.033 0.061 0.177 0.011 0.028 0.029 0.003 0.013 0.004 0.001 32 H 0.504 0.041 0.078 0.281 0.011 0.028 0.039 0.006 0.010 0.002 0.001 33 R 0.394 0.058 0.141 0.235 0.031 0.026 0.067 0.012 0.014 0.020 0.001 34 N 0.165 0.027 0.081 0.263 0.015 0.084 0.298 0.027 0.034 0.005 0.001 35 Q 0.330 0.085 0.143 0.208 0.042 0.028 0.095 0.037 0.021 0.011 0.001 36 R 0.307 0.097 0.180 0.239 0.031 0.022 0.052 0.033 0.011 0.026 0.001 37 R 0.085 0.318 0.391 0.069 0.063 0.039 0.020 0.004 0.009 0.002 0.001 38 T 0.034 0.134 0.659 0.007 0.088 0.055 0.002 0.001 0.016 0.007 0.001 39 L 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 S 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 D 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 R 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 A 0.954 0.001 0.001 0.045 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 T 0.136 0.001 0.003 0.858 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 D 0.009 0.001 0.001 0.011 0.001 0.008 0.946 0.022 0.004 0.001 0.001 48 L 0.082 0.243 0.533 0.024 0.025 0.055 0.014 0.002 0.019 0.002 0.001 49 T 0.341 0.037 0.466 0.034 0.013 0.087 0.004 0.005 0.006 0.004 0.003 50 R 0.946 0.013 0.018 0.010 0.003 0.003 0.001 0.002 0.001 0.002 0.001 51 A 0.990 0.001 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 52 T 0.993 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 53 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 56 F 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 57 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 L 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 59 T 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 60 L 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 61 V 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 62 E 0.988 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 63 L 0.534 0.004 0.004 0.454 0.001 0.001 0.001 0.001 0.002 0.001 0.001 64 G 0.050 0.002 0.007 0.023 0.011 0.001 0.180 0.694 0.002 0.031 0.001 65 Y 0.235 0.182 0.305 0.086 0.071 0.078 0.023 0.001 0.010 0.007 0.002 66 V 0.068 0.621 0.167 0.047 0.022 0.049 0.001 0.001 0.024 0.001 0.001 67 A 0.056 0.501 0.271 0.028 0.078 0.042 0.002 0.001 0.019 0.002 0.001 68 T 0.178 0.571 0.094 0.036 0.042 0.031 0.005 0.002 0.040 0.002 0.001 69 D 0.055 0.088 0.109 0.165 0.025 0.065 0.292 0.003 0.194 0.005 0.001 70 G 0.105 0.004 0.046 0.030 0.043 0.004 0.082 0.509 0.002 0.172 0.003 71 S 0.408 0.084 0.114 0.313 0.035 0.010 0.013 0.010 0.004 0.008 0.001 72 A 0.145 0.329 0.202 0.137 0.082 0.024 0.034 0.011 0.024 0.010 0.001 73 F 0.037 0.540 0.205 0.059 0.068 0.039 0.020 0.003 0.026 0.002 0.001 74 W 0.029 0.431 0.243 0.009 0.058 0.081 0.013 0.001 0.132 0.003 0.001 75 L 0.174 0.105 0.576 0.054 0.012 0.053 0.002 0.001 0.004 0.002 0.017 76 T 0.351 0.143 0.313 0.008 0.069 0.036 0.005 0.002 0.066 0.006 0.001 77 P 0.984 0.001 0.008 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.002 78 R 0.988 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 79 V 0.982 0.003 0.002 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 80 L 0.993 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 81 E 0.986 0.002 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 82 L 0.946 0.002 0.002 0.048 0.001 0.001 0.001 0.001 0.001 0.001 0.001 83 G 0.962 0.003 0.006 0.014 0.001 0.002 0.004 0.007 0.001 0.001 0.001 84 Y 0.976 0.003 0.002 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 85 S 0.972 0.003 0.004 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 86 Y 0.935 0.005 0.005 0.049 0.001 0.002 0.001 0.001 0.001 0.001 0.001 87 L 0.900 0.008 0.014 0.067 0.001 0.004 0.003 0.001 0.001 0.001 0.001 88 S 0.842 0.014 0.034 0.090 0.005 0.004 0.006 0.001 0.001 0.001 0.001 89 S 0.446 0.019 0.035 0.430 0.008 0.015 0.025 0.011 0.011 0.001 0.001 90 L 0.260 0.130 0.291 0.183 0.012 0.055 0.020 0.003 0.044 0.002 0.001 91 S 0.295 0.094 0.295 0.114 0.036 0.066 0.048 0.011 0.026 0.016 0.001