# List of top-scoring protein chains for T0381.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g7uA 257 1.34e-15 1mkmA 249 1.77e-11 a.4.5.33,d.110.2.2 79242,79243 1q1hA 110 3.70e-05 a.4.5.41 95580 1ku9A 152 1.30e-03 a.4.5.36 77544 1j75A 67 1.35e-03 a.4.5.19 62673 2fbhA 146 1.64e-03 1r22A 122 2.46e-03 a.4.5.5 104777 1qbjA 81 2.57e-03 1qbjA a.4.5.19 16155 2b0lA 102 2.59e-03 2acjA 66 2.91e-03 1qgpA 77 3.38e-03 1qbjA a.4.5.19 16158 1i1gA 141 4.83e-03 a.4.5.32,d.58.4.2 65982,65983 1ft9A 222 5.87e-03 1ft9A a.4.5.4,b.82.3.1 16107,28131 1r1tA 122 7.10e-03 a.4.5.5 104769 1o5lA 213 9.11e-03 b.82.3.2 92506 1u2wA 122 1.04e-02 2a61A 145 1.91e-02 1ulyA 192 1.95e-02 2cfxA 144 2.06e-02 1ri7A 171 2.18e-02 a.4.5.32,d.58.4.2 97504,97505 2fnaA 357 2.41e-02 1lj9A 144 2.60e-02 a.4.5.28 78035 1sfxA 109 4.01e-02 a.4.5.50 105505 1v4rA 102 4.13e-02 1r7jA 95 4.50e-02 a.4.5.49 104836 1lnwA 147 4.62e-02 a.4.5.28 78104 2ethA 154 5.46e-02 1hw5A 210 5.94e-02 2cgpA a.4.5.4,b.82.3.2 16098,28137 1o3sA 200 6.78e-02 a.4.5.4,b.82.3.2 86609,86610 1wsuA 124 7.35e-02 1lvaA 258 7.42e-02 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2dbbA 151 9.01e-02 1i6xA 209 9.31e-02 a.4.5.4,b.82.3.2 83673,83674 1i5zA 209 9.34e-02 a.4.5.4,b.82.3.2 83669,83670 1g6nA 210 9.37e-02 2cgpA a.4.5.4,b.82.3.2 16100,28139 1bia 321 9.56e-02 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1o3tA 200 1.01e-01 a.4.5.4,b.82.3.2 86611,86612 1s3jA 155 1.05e-01 a.4.5.28 98437 1cgpA 205 1.17e-01 a.4.5.4,b.82.3.2 16096,28135 1rxtA 496 1.21e-01 1j5yA 187 2.14e-01 a.4.5.1,d.94.2.1 71592,71593 1ruoA 209 2.45e-01 2cgpA a.4.5.4,b.82.3.2 16105,28144 1tw3A 360 2.67e-01 a.4.5.29,c.66.1.12 107373,107374 1xnpA 202 2.81e-01 2cg4A 152 3.90e-01 1mzbA 136 4.01e-01 a.4.5.42 91497 1ylfA 149 4.25e-01 2fxaA 207 4.33e-01 1oryA 130 5.00e-01 a.24.19.1 93466 1rr7A 129 5.02e-01 a.4.1.14 105075 2fu4A 83 5.04e-01 1orjA 130 5.09e-01 a.24.19.1 93456 2gauA 232 5.78e-01 2givA 295 5.84e-01 1r1uA 106 8.29e-01 a.4.5.5 104771 1fp2A 352 8.39e-01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1p6rA 82 9.08e-01 a.4.5.39 94187 1wdvA 152 9.11e-01 1b1bA 140 9.16e-01 1bi0 a.4.5.24,a.76.1.1 16215,18421 1qzzA 374 9.35e-01 a.4.5.29,c.66.1.12 96719,96720 1bw6A 56 1.08e+00 1bw6A a.4.1.7 16052 2cohA 202 1.27e+00 1res 43 1.27e+00 1ret a.4.1.2 16023 1oyiA 82 1.29e+00 a.4.5.19 93729 2h6bA 250 1.33e+00 1xn7A 78 1.47e+00 1fx7A 230 1.48e+00 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1f5tA 121 1.62e+00 1bi0 a.4.5.24,a.76.1.1 16203,18409 1hlvA 131 1.84e+00 a.4.1.7,a.4.1.7 65854,65855 2csbA 519 1.92e+00 2cw8A 537 2.03e+00 1p4xA 250 2.06e+00 a.4.5.28,a.4.5.28 87784,87785 1hw1A 239 2.18e+00 1e2xA a.4.5.6,a.78.1.1 16111,18441 1e2xA 243 2.19e+00 1e2xA a.4.5.6,a.78.1.1 16113,18443 1m7kA 99 2.87e+00 a.7.7.1 74573 2bjcA 62 3.19e+00 1eyhA 144 3.32e+00 1eduA a.118.9.1 19214 1eduA 149 3.48e+00 1eduA a.118.9.1 19215 2cw5A 255 3.87e+00 1inzA 148 3.94e+00 1eduA a.118.9.1 62610 1sd6A 123 3.94e+00 a.4.5.39 98803 1wojA 214 3.94e+00 1xcvA 139 4.07e+00 1h0aA 158 4.09e+00 a.118.9.1 76434 2ev0A 142 4.14e+00 1zx4A 192 4.51e+00 1je8A 82 4.61e+00 a.4.6.2 77108 1okrA 123 4.66e+00 a.4.5.39 93269 1on2A 142 4.81e+00 a.4.5.24,a.76.1.1 87103,87104 1vhkA 268 4.91e+00 b.122.1.2,c.116.1.5 100680,100681 2br2A 275 4.95e+00 1pxgA 382 4.99e+00 c.1.20.1 95287 1xd7A 145 5.01e+00 a.4.5.55 109566 1y0uA 96 5.28e+00 1fzpB 123 5.53e+00 1fznD a.4.5.28 19008 2frhA 127 5.66e+00 1xs9A 132 6.61e+00 1bl0A 129 6.69e+00 1d5yA a.4.1.8,a.4.1.8 16053,16054 2dtr 226 6.77e+00 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1g3tA 226 6.90e+00 a.4.5.24,a.76.1.1,b.34.1.2 65127,65128,65129 1c0wA 225 7.10e+00 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2tdx 226 7.24e+00 1bi0 a.4.5.24,a.76.1.1 16201,18407 1efzA 386 7.29e+00 1pud c.1.20.1 29659 1wkd 386 7.29e+00 1pud c.1.20.1 29664 1wke 386 7.34e+00 1pud c.1.20.1 29663 1wkf 386 7.35e+00 1pud c.1.20.1 29662 1ozqA 386 7.37e+00 c.1.20.1 93854 1y5wA 385 7.37e+00 1r5yA 386 7.38e+00 c.1.20.1 97134 1p92A 226 7.48e+00 a.4.5.24,a.76.1.1,b.34.1.2 104085,104086,104087 1g3yA 226 7.62e+00 a.4.5.24,a.76.1.1,b.34.1.2 65136,65137,65138 1m62A 87 7.69e+00 a.7.7.1 74520 2eshA 118 8.65e+00 1z91A 147 8.73e+00 1lccA 51 8.77e+00 1pru a.35.1.5 17110 1sfuA 75 9.09e+00 a.4.5.19 105503 1fwzA 226 9.36e+00 a.4.5.24,a.76.1.1,b.34.1.2 60077,60078,60079 2es9A 115 9.41e+00 1am9A 82 9.66e+00 1am9A a.38.1.1 17140 2fnpA 124 9.93e+00 1jgsA 138 1.01e+01 a.4.5.28 66683 1jekA 42 1.01e+01 1jekA h.3.2.1 62920 1a6s 87 1.04e+01 1a6s a.61.1.4 18134 1lqc 56 1.04e+01 1pru a.35.1.5 17109 1uxc 65 1.05e+01 1uxc a.35.1.5 17119 1mw9X 592 1.05e+01 e.10.1.1 91480 1ecl 597 1.05e+01 1ecl e.10.1.1 43238 1ysyA 85 1.06e+01 1cy2A 599 1.07e+01 1ecl e.10.1.1 43241 2ahmA 88 1.08e+01 2cmxA 118 1.10e+01 1l1mA 62 1.17e+01 a.35.1.5 73474 1cjgA 62 1.34e+01 1pru a.35.1.5 17112 1lwuC 323 1.35e+01 d.171.1.1,h.1.8.1 74312,74313 1zybA 232 1.37e+01 1umqA 81 1.41e+01 a.4.1.12 99625 1e08A 371 1.41e+01 i.4.1.1 45914 1h0hA 977 1.43e+01 b.52.2.2,c.81.1.1 76435,76436 1z05A 429 1.46e+01 1mjbA 278 1.56e+01 d.108.1.1 79192 1b0nA 111 1.58e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 2h6cA 232 1.58e+01 1mjaA 278 1.62e+01 d.108.1.1 79191 1fy7A 278 1.64e+01 1fy7A d.108.1.1 40817 1hfeL 421 1.64e+01 1fehA c.96.1.1,d.58.1.5 36018,39001 1mj9A 278 1.70e+01 d.108.1.1 79190 1xd4A 852 1.73e+01 1wi3A 71 1.73e+01 1nvvS 481 1.73e+01 a.117.1.1 86279 1xd2C 484 1.73e+01 1bkdS 477 1.73e+01 1bkdS a.117.1.1 19111 1xdvA 847 1.73e+01 1l3wA 546 1.88e+01 b.1.6.1,b.1.6.1,b.1.6.1,b.1.6.1,b.1.6.1 73553,73554,73555,73556,73557 1zljA 78 1.88e+01 1z56A 246 1.91e+01 1vl1A 232 2.01e+01 c.124.1.1 108707 1pbtA 244 2.05e+01 c.124.1.1 94416 1n4tA 219 2.07e+01 d.61.1.3 91671 1j0rA 122 2.08e+01 a.4.5.7 90745 1bm9A 122 2.08e+01 1bm9A a.4.5.7 16116 2a4dA 160 2.13e+01 1zlkA 95 2.16e+01 1w8jA 766 2.17e+01 1w7jA 795 2.19e+01 1u9lA 70 2.23e+01 a.60.4.2 107751 1n6zA 105 2.27e+01 d.263.1.1 85369 1repC 251 2.29e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1wclA 76 2.33e+01 1ldkB 366 2.64e+01 a.4.5.34,e.40.1.1 73852,73853 1j7gA 144 2.68e+01 c.110.1.1 84130 2ba1A 179 2.82e+01 1r7lA 110 2.84e+01 d.277.1.1 104837 1w19A 160 2.92e+01 1s7oA 113 2.92e+01 a.4.13.3 105354 1zr4A 183 2.99e+01 2fbiA 142 3.03e+01 2dfsA 1080 3.10e+01 2cwoA 197 3.19e+01 1wfpA 74 3.32e+01 2cv8A 180 3.34e+01 1d8lA 149 3.35e+01 1hjp a.60.2.1,b.40.4.2 17948,25267 1jlwA 219 3.48e+01 a.45.1.1,c.47.1.5 71741,71742 1ogyA 802 3.54e+01 b.52.2.2,c.81.1.1 92952,92953 1gdtA 183 3.57e+01 2rslA a.4.1.2,c.53.1.1 16021,33348 1nzpA 87 3.59e+01 a.60.6.1 92385 1nmuB 104 3.60e+01 d.79.3.1 80666 1t0kB 105 3.62e+01 d.79.3.1 106215 1x2mA 64 3.64e+01 1c5dB 215 3.68e+01 1igtB b.1.1.1,b.1.1.2 20415,21387 1wjhA 76 3.74e+01 1hjdA 101 3.74e+01 b.34.2.1 65846 2f8xC 434 3.82e+01 1i1jA 108 3.86e+01 1i1jA b.34.2.1 61531 2a3lA 701 3.96e+01 1oafA 261 3.99e+01 a.93.1.1 86734 2ghcX 261 4.00e+01 1t95A 240 4.03e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1mejA 223 4.04e+01 c.65.1.1 79029 2cl4X 261 4.05e+01 1l7pA 211 4.08e+01 c.108.1.4 73670 1j97A 211 4.09e+01 1f5sA c.108.1.4 62753 1l7mA 211 4.10e+01 c.108.1.4 73664 1w99A 558 4.24e+01 1t9hA 307 4.41e+01 1p9qC 256 4.44e+01 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 1kftA 78 4.48e+01 a.60.2.3 77375 1udlA 98 4.55e+01 b.34.2.1 99212 1tie 172 4.75e+01 1wba b.42.4.1 25592 1jkoC 52 4.83e+01 a.4.1.2 66809 2gm4A 183 4.84e+01 1yna 194 4.86e+01 1axkA b.29.1.11 24335 2cwjA 123 4.89e+01 1opc 110 4.90e+01 1opc a.4.6.1 16231 1bf2 750 4.92e+01 1bf2 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 1meoA 209 4.95e+01 c.65.1.1 79035 1yd6A 99 5.03e+01 1lfpA 249 5.03e+01 e.39.1.1 73885 2gm3A 175 5.22e+01 1odd 118 5.34e+01 1opc a.4.6.1 16232 2aehA 369 5.37e+01 1gs5A 258 5.39e+01 c.73.1.2 70395 1a04A 215 5.39e+01 1a04A a.4.6.2,c.23.1.1 16234,31089 1q55A 880 5.45e+01 i.20.1.1 95862 1j7dA 145 5.54e+01 1jatB d.20.1.1 62680 1b8sA 504 5.57e+01 1b8sA c.3.1.2,d.16.1.1 30335,37866 1cc2A 504 5.58e+01 1b8sA c.3.1.2,d.16.1.1 30337,37868 1cboA 504 5.59e+01 1b8sA c.3.1.2,d.16.1.1 30336,37867 1ad6 185 5.59e+01 1guxA a.74.1.3 18390 1zlyA 203 5.62e+01 1n4wA 504 5.63e+01 c.3.1.2,d.16.1.1 91676,91677 2fp4B 395 5.70e+01 1eudB 396 5.71e+01 2scuB c.23.4.1,d.142.1.4 31150,41571 1wfkA 88 5.73e+01 2aj4A 548 5.74e+01 1vz0A 230 5.79e+01 a.4.14.1,d.268.1.1 108929,108930 2beoA 236 5.84e+01 1xmwA 178 5.87e+01 1ijhA 504 5.92e+01 c.3.1.2,d.16.1.1 66161,66162 2bgcA 238 5.93e+01 2ghiA 260 5.96e+01 1n73C 330 5.97e+01 d.171.1.1,h.1.8.1 80217,80218 2az0A 73 6.04e+01 1ldjA 760 6.17e+01 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1jotA 133 6.25e+01 1jotA 1j3uA 468 6.32e+01 a.127.1.1 84078 2b5aA 77 6.34e+01 2al6A 375 6.37e+01 1ufmA 84 6.41e+01 a.4.5.47 107816 1nuuA 252 6.42e+01 c.26.1.3 86209 1omiA 248 6.49e+01 b.82.3.3,a.4.5.4 87079,87080 1oq1A 223 6.58e+01 b.29.1.17 93408 2fq4A 192 6.62e+01 2ebn 289 6.64e+01 2ebn c.1.8.5 28990 1bh9B 89 6.68e+01 1bh9B a.22.1.3 16485 1lqyA 184 6.71e+01 d.167.1.1 74212 2dboA 148 6.73e+01 1xexB 172 6.74e+01 1u6gA 776 6.76e+01 2drwA 363 6.79e+01 2da1A 70 6.80e+01 1oa8A 133 6.89e+01 b.145.1.1 92698 1vd6A 224 6.90e+01 1oqvA 192 7.06e+01 d.24.1.2 87320 1zl8B 54 7.11e+01 1g7dA 106 7.14e+01 1g7dA a.71.1.1 18318 1xewY 172 7.23e+01 1apxA 249 7.29e+01 1ryc a.93.1.1 18669 487dI 135 7.32e+01 1rl2A i.1.1.2 45836 1u8bA 133 7.37e+01 1hjp 203 7.37e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16274,17947,25266 1zguA 139 7.38e+01 1rl2A 137 7.43e+01 1rl2A b.34.5.3,b.40.4.5 24610,25342 1d0qA 103 7.47e+01 1d0qA g.41.3.2 45208 1w55A 371 7.47e+01 1zgwA 139 7.56e+01 2cdqA 510 7.70e+01 1xsvA 113 8.07e+01 1ic7H 114 8.09e+01 1f3rB b.1.1.1 62258 2as8A 222 8.41e+01 1ic4H 114 8.47e+01 1f3rB b.1.1.1 62251 1qezA 173 8.54e+01 2prd b.40.5.1 25410 1ic5H 114 8.65e+01 1f3rB b.1.1.1 62254 2f2eA 146 8.66e+01 1jrhH 219 8.73e+01 1igtB b.1.1.1,b.1.1.2 20223,21235 1e0gA 48 8.87e+01 1e01A d.7.1.1 37325 2brqA 97 8.90e+01