# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g7uA 257 2.76e-12 1mkmA 249 5.42e-09 a.4.5.33,d.110.2.2 79242,79243 2fbhA 146 1.27e-04 2b0lA 102 2.89e-04 1ulyA 192 5.99e-04 2a61A 145 8.64e-04 2fnaA 357 1.38e-03 1r1tA 122 1.84e-03 a.4.5.5 104769 1lnwA 147 1.85e-03 a.4.5.28 78104 1sfxA 109 2.46e-03 a.4.5.50 105505 1lj9A 144 3.29e-03 a.4.5.28 78035 1j75A 67 4.95e-03 a.4.5.19 62673 1qzzA 374 5.77e-03 a.4.5.29,c.66.1.12 96719,96720 1qbjA 81 6.06e-03 1qbjA a.4.5.19 16155 2fu4A 83 6.94e-03 2ethA 154 9.89e-03 1u2wA 122 1.04e-02 1bia 321 1.05e-02 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1fp2A 352 1.51e-02 1fpxA a.4.5.29,c.66.1.12 59941,59942 2fxaA 207 2.93e-02 1lvaA 258 3.06e-02 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1r1uA 106 3.39e-02 a.4.5.5 104771 2gauA 232 3.81e-02 1r7jA 95 6.79e-02 a.4.5.49 104836 1jgsA 138 7.99e-02 a.4.5.28 66683 1mzbA 136 8.28e-02 a.4.5.42 91497 2fbiA 142 8.78e-02 1orjA 130 1.04e-01 a.24.19.1 93456 1hw5A 210 1.10e-01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1wdvA 152 1.11e-01 1hw1A 239 1.82e-01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1on2A 142 2.13e-01 a.4.5.24,a.76.1.1 87103,87104 1xd7A 145 2.34e-01 a.4.5.55 109566 1p4xA 250 3.15e-01 a.4.5.28,a.4.5.28 87784,87785 1z91A 147 3.18e-01 1ldjA 760 3.84e-01 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1sfuA 75 3.97e-01 a.4.5.19 105503 1y0uA 96 4.17e-01 2h6bA 250 4.89e-01 1wojA 214 8.41e-01 2cohA 202 9.04e-01 1mw9X 592 9.19e-01 e.10.1.1 91480 1in4A 334 9.82e-01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1ub9A 100 1.08e+00 a.4.5.28 99159 1in6A 334 1.11e+00 1hqcA a.4.5.11,c.37.1.20 62601,62602 1bjaA 95 1.26e+00 1bjaA a.4.5.9 16122 1bgvA 449 1.33e+00 1k89 c.2.1.7,c.58.1.1 30217,33865 2b5aA 77 1.34e+00 1hq0A 295 1.54e+00 1hzgA d.194.1.1 61122 1vl1A 232 1.55e+00 c.124.1.1 108707 1eyhA 144 1.72e+00 1eduA a.118.9.1 19214 2cfxA 144 1.72e+00 2es9A 115 1.75e+00 2cujA 108 1.84e+00 2cw8A 537 2.04e+00 1bg2 325 2.09e+00 1bg2 c.37.1.9 32189 1j7gA 144 2.42e+00 c.110.1.1 84130 1hlvA 131 2.58e+00 a.4.1.7,a.4.1.7 65854,65855 1nm8A 616 2.68e+00 c.43.1.3,c.43.1.3 85872,85873 1xn7A 78 2.91e+00 2guhA 214 3.05e+00 2dbbA 151 3.30e+00 2bgcA 238 3.48e+00 1ufmA 84 3.78e+00 a.4.5.47 107816 1zarA 282 4.09e+00 1zljA 78 4.13e+00 1stzA 338 4.20e+00 a.4.5.51,d.110.2.3 106009,106010 1zx4A 192 4.47e+00 2f2eA 146 4.47e+00 1fy7A 278 5.17e+00 1fy7A d.108.1.1 40817 1v7nV 163 5.38e+00 a.26.1.2 100476 1tbxA 99 5.40e+00 a.4.5.48 106748 2fbkA 181 5.58e+00 1zybA 232 5.68e+00 1ymiA 334 5.86e+00 1je8A 82 6.01e+00 a.4.6.2 77108 1yna 194 6.43e+00 1axkA b.29.1.11 24335 2ab0A 205 7.15e+00 2fokA 579 7.59e+00 2fokA a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12 16131,16132,16133,33323 1aisB 200 7.78e+00 1aisB a.74.1.2,a.74.1.2 18384,18385 1meoA 209 7.78e+00 c.65.1.1 79035 1b0nA 111 7.93e+00 1b0nA a.34.1.1,a.35.1.3 17001,17064 1res 43 7.94e+00 1ret a.4.1.2 16023 1li5A 461 7.97e+00 a.27.1.1,c.26.1.1 73912,73913 1za0A 275 8.36e+00 2csbA 519 8.53e+00 2fq3A 104 8.75e+00 1utxA 66 8.84e+00 a.35.1.3 108034 2h3bA 494 9.38e+00 2d48A 129 1.02e+01 1tqgA 105 1.02e+01 a.24.10.3 107224 1go3F 107 1.02e+01 a.60.8.2 65407 1dwkA 156 1.06e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 2gu2A 312 1.11e+01 1t1dA 100 1.15e+01 1t1dA d.42.1.2 38637 1xl7A 612 1.18e+01 1pb6A 212 1.18e+01 a.4.1.9,a.121.1.1 88017,88018 2cz2A 223 1.18e+01 1cuk 203 1.28e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1uliB 187 1.31e+01 d.17.4.4 107923 1wj5A 120 1.32e+01 1tm9A 137 1.35e+01 a.225.1.1 107150 1ed1A 135 1.37e+01 1hiwA a.61.1.1 18130 2fswA 107 1.41e+01 1uxtA 501 1.46e+01 c.82.1.1 108125 1zj6A 187 1.51e+01 1xmkA 79 1.51e+01 2cmxA 118 1.51e+01 1zb1A 392 1.58e+01 1jhfA 202 1.58e+01 a.4.5.2,b.87.1.1 63057,63058 2h17A 181 1.59e+01 1sfe 180 1.62e+01 1sfe a.4.2.1,c.55.7.1 16073,33748 1jkoC 52 1.65e+01 a.4.1.2 66809 1z1dA 103 1.69e+01 2ex2A 458 1.71e+01 1t1uA 639 1.74e+01 1bl0A 129 1.75e+01 1d5yA a.4.1.8,a.4.1.8 16053,16054 2cg4A 152 1.78e+01 1m33A 258 1.81e+01 c.69.1.26 78514 1z67A 135 1.84e+01 1ydyA 356 1.88e+01 1t33A 224 1.91e+01 a.4.1.9,a.121.1.1 106295,106296 1xkgA 312 2.04e+01 1xruA 282 2.21e+01 1gvjA 146 2.25e+01 a.4.5.21 90525 2g6tA 306 2.35e+01 2db0A 253 2.36e+01 2co5A 99 2.41e+01 1opc 110 2.42e+01 1opc a.4.6.1 16231 1io0A 185 2.50e+01 c.10.1.1 76753 1y7yA 74 2.52e+01 2bcqA 335 2.55e+01 2fd6U 276 2.56e+01 1u8bA 133 2.63e+01 1d0dA 60 2.66e+01 1kigI g.8.1.2 44566 1xvqA 175 2.73e+01 1xs5A 241 2.74e+01 1hziA 129 2.75e+01 1rcb a.26.1.2 61449 2fp4B 395 2.76e+01 1fjlA 81 2.77e+01 2hddA a.4.1.1 16017 1ym5A 300 2.77e+01 2tct 207 2.81e+01 2tct a.4.1.9,a.121.1.1 16063,19240 1ia8A 289 2.84e+01 1ia8A d.144.1.7 62112 1k8qA 377 2.92e+01 c.69.1.6 72177 1om1A 332 2.93e+01 d.144.1.7 93347 1bg4 302 2.94e+01 1taxA c.1.8.3 28806 2faoA 309 3.11e+01 2c78A 405 3.12e+01 1jggA 60 3.15e+01 2hddA a.4.1.1 62950 2al6A 375 3.18e+01 1w36B 1180 3.19e+01 1wi9A 72 3.23e+01 1rr7A 129 3.31e+01 a.4.1.14 105075 1hrnA 337 3.32e+01 1smrA b.50.1.2 26869 1ma3A 253 3.34e+01 c.31.1.5 78883 1i7nA 309 3.35e+01 c.30.1.5,d.142.1.3 83681,83682 2brqA 97 3.36e+01 2givA 295 3.38e+01 1b24A 188 3.39e+01 1b24A d.95.2.1,d.95.2.1 40573,40574 1l9kA 305 3.45e+01 c.66.1.25 84569 1w99A 558 3.57e+01 1ovnA 248 3.57e+01 a.71.1.1,c.47.1.7 93602,93603 1zzmA 259 3.64e+01 2a6vA 226 3.67e+01 1ly1A 181 3.68e+01 c.37.1.1 74334 1f9vA 347 3.75e+01 1bg2 c.37.1.9 59745 1l7mA 211 3.88e+01 c.108.1.4 73664 1vi0A 206 3.88e+01 a.4.1.9,a.121.1.1 100720,100721 1n4wA 504 3.91e+01 c.3.1.2,d.16.1.1 91676,91677 1tc5A 194 4.11e+01 c.110.1.1 106752 1pvxA 194 4.21e+01 1axkA b.29.1.11 24341 1mrzA 293 4.24e+01 b.43.5.1,c.26.1.3 91452,91453 1oa8A 133 4.32e+01 b.145.1.1 92698 2ar1A 172 4.40e+01 1dceB 331 4.47e+01 1dceB a.102.4.3 18872 2f1cX 286 4.50e+01 1syyA 346 4.51e+01 a.25.1.2 106126 1v7bA 185 4.55e+01 2gm3A 175 4.68e+01 1nuuA 252 4.83e+01 c.26.1.3 86209 1neq 74 4.84e+01 1neq a.35.1.2 17063 1aoy 78 4.88e+01 1aoy a.4.5.3 16087 1tkiA 321 4.92e+01 1tkiA d.144.1.7 41638 1sjdA 368 4.98e+01 c.1.11.2,d.54.1.1 105632,105633 1mucA 373 5.01e+01 1mucA c.1.11.2,d.54.1.1 29236,38880 1repC 251 5.18e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1sseB 86 5.32e+01 1v8fA 276 5.38e+01 c.26.1.4 100503 1adt 356 5.46e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17887,45362,45368 1z0wA 207 5.51e+01 1lucB 324 5.52e+01 1lucA c.1.16.1 29548 1eswA 500 5.55e+01 1cwyA c.1.8.1 59500 1mzhA 225 5.60e+01 c.1.10.1 79698 2ccqA 99 5.75e+01 1qgoA 264 5.77e+01 1qgoA c.92.1.2 35596 1rhcA 330 5.78e+01 c.1.16.3 97468 1a6s 87 5.81e+01 1a6s a.61.1.4 18134 1vb3A 428 5.83e+01 1z77A 200 5.83e+01 1rktA 205 5.85e+01 a.4.1.9,a.121.1.1 97623,97624 1fp3A 402 5.87e+01 1fp3A a.102.1.3 18842 1m7kA 99 5.88e+01 a.7.7.1 74573 2cfuA 658 5.91e+01 1zsoA 164 5.98e+01 1sffA 426 6.07e+01 c.67.1.4 105482 1jkeA 145 6.09e+01 c.110.1.1 66791 1r8sE 203 6.20e+01 a.118.3.1 97248 1wkbA 810 6.23e+01 1sd4A 126 6.24e+01 a.4.5.39 105428 1jkmB 361 6.29e+01 1jkmA c.69.1.2 34634 1ltqA 301 6.32e+01 c.108.1.9,c.37.1.1 78208,78209 2a5dA 175 6.35e+01 1bolA 222 6.41e+01 1bolA d.124.1.1 41120 1o8vA 134 6.46e+01 b.60.1.2 86680 2bx6A 350 6.48e+01 1w19A 160 6.50e+01 1wwpA 119 6.50e+01 2a6zA 222 6.55e+01 1p99A 295 6.58e+01 c.94.1.1 94384 1o97D 320 6.66e+01 c.26.2.3,c.31.1.2 81233,81234 1a0p 290 6.78e+01 1a0p a.60.9.1,d.163.1.1 18105,42165 2g9mA 133 6.81e+01 1r0vA 305 6.88e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 2f4iA 197 6.89e+01 2gu1A 361 6.94e+01 1o3yA 166 6.97e+01 c.37.1.8 86618 1fkmA 396 7.03e+01 1fkmA a.69.2.1,a.69.2.1 18315,18316 1jyoA 130 7.04e+01 d.198.1.1 67483 2g7gA 213 7.23e+01 2a8yA 270 7.27e+01 1zwyA 185 7.28e+01 1ylxA 103 7.29e+01 1kpsB 171 7.29e+01 a.118.12.1 68787 1y791 680 7.32e+01 1l8aA 886 7.39e+01 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 1oqvA 192 7.50e+01 d.24.1.2 87320 1qyaA 307 7.56e+01 d.21.1.2,d.21.1.2 104653,104654 1qgiA 259 7.65e+01 1qgiA d.2.1.7 37001 1dekA 241 7.65e+01 1dekA c.37.1.1 31842 1pzxA 289 7.73e+01 c.119.1.1 95484 1mr3F 181 7.75e+01 c.37.1.8 79422 1zdyA 307 7.80e+01 1lmb3 92 7.80e+01 1lmb3 1hy7A 173 7.89e+01 d.92.1.11 65957 1uptA 171 7.91e+01 c.37.1.8 99767 2arcA 164 7.96e+01 2arcA b.82.4.1 28148 1dmuA 299 8.01e+01 1dmuA c.52.1.4 33294 1bm9A 122 8.04e+01 1bm9A a.4.5.7 16116 1ug3A 339 8.14e+01 2bb6A 414 8.19e+01 2f46A 156 8.26e+01 3thiA 371 8.26e+01 2thiA c.94.1.1 35792 1xb4A 202 8.29e+01 1uocA 289 8.32e+01 c.55.3.9 99686 1nb8A 353 8.34e+01 d.3.1.9 80385 1s5jA 847 8.45e+01 1wu3I 161 8.58e+01 2aneA 125 8.82e+01 1lla 628 8.85e+01 1lla a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1eaqA 140 8.92e+01 b.2.5.6 76144 1xedA 117 8.96e+01 1wpbA 172 8.97e+01