# TARGET T0381 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0381.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 175.891 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.016 0.007 0.004 0.006 0.089 0.878 2 T 0.030 0.016 0.009 0.013 0.183 0.750 3 A 0.017 0.016 0.035 0.019 0.271 0.643 4 T 0.023 0.020 0.033 0.016 0.294 0.614 5 E 0.023 0.017 0.026 0.014 0.287 0.634 6 P 0.013 0.015 0.035 0.025 0.214 0.699 7 T 0.009 0.027 0.168 0.080 0.304 0.411 8 E 0.007 0.011 0.474 0.095 0.269 0.143 9 K 0.007 0.007 0.500 0.076 0.292 0.118 10 I 0.013 0.019 0.230 0.075 0.395 0.268 11 L 0.010 0.020 0.024 0.022 0.325 0.599 12 P 0.006 0.021 0.010 0.020 0.275 0.669 13 S 0.003 0.012 0.007 0.014 0.338 0.626 14 P 0.002 0.005 0.094 0.315 0.381 0.203 15 D 0.004 0.005 0.067 0.662 0.149 0.113 16 Y 0.002 0.001 0.018 0.945 0.024 0.010 17 V 0.003 0.001 0.004 0.968 0.010 0.013 18 Q 0.003 0.001 0.005 0.974 0.009 0.007 19 S 0.004 0.001 0.006 0.972 0.008 0.009 20 L 0.001 0.001 0.002 0.996 0.001 0.001 21 A 0.001 0.001 0.001 0.998 0.001 0.001 22 R 0.001 0.001 0.001 0.998 0.001 0.001 23 G 0.001 0.001 0.001 0.997 0.001 0.001 24 L 0.001 0.001 0.002 0.993 0.003 0.002 25 A 0.001 0.001 0.003 0.991 0.004 0.001 26 V 0.001 0.001 0.003 0.992 0.003 0.001 27 I 0.001 0.001 0.008 0.987 0.003 0.001 28 R 0.001 0.001 0.011 0.984 0.003 0.001 29 C 0.002 0.001 0.008 0.977 0.005 0.008 30 F 0.006 0.006 0.019 0.731 0.037 0.201 31 D 0.013 0.012 0.061 0.340 0.181 0.394 32 H 0.012 0.006 0.140 0.247 0.383 0.211 33 R 0.008 0.007 0.132 0.220 0.457 0.175 34 N 0.007 0.008 0.117 0.105 0.565 0.198 35 Q 0.010 0.004 0.068 0.054 0.538 0.326 36 R 0.071 0.024 0.044 0.036 0.351 0.475 37 R 0.110 0.056 0.009 0.023 0.216 0.586 38 T 0.069 0.025 0.003 0.038 0.050 0.814 39 L 0.001 0.001 0.006 0.985 0.002 0.006 40 S 0.001 0.001 0.003 0.994 0.001 0.001 41 D 0.001 0.001 0.003 0.994 0.001 0.001 42 V 0.001 0.001 0.003 0.995 0.001 0.001 43 A 0.001 0.001 0.002 0.995 0.002 0.001 44 R 0.001 0.001 0.006 0.982 0.007 0.005 45 A 0.001 0.001 0.007 0.952 0.014 0.025 46 T 0.002 0.007 0.012 0.678 0.066 0.235 47 D 0.001 0.002 0.002 0.005 0.076 0.914 48 L 0.002 0.008 0.002 0.003 0.107 0.877 49 T 0.003 0.006 0.001 0.006 0.087 0.897 50 R 0.003 0.004 0.013 0.370 0.149 0.461 51 A 0.001 0.001 0.012 0.929 0.029 0.029 52 T 0.001 0.001 0.005 0.982 0.004 0.008 53 A 0.001 0.001 0.001 0.998 0.001 0.001 54 R 0.001 0.001 0.001 0.999 0.001 0.001 55 R 0.001 0.001 0.001 0.999 0.001 0.001 56 F 0.001 0.001 0.001 0.999 0.001 0.001 57 L 0.001 0.001 0.001 0.999 0.001 0.001 58 L 0.001 0.001 0.001 0.999 0.001 0.001 59 T 0.001 0.001 0.001 0.998 0.001 0.001 60 L 0.001 0.001 0.003 0.995 0.002 0.001 61 V 0.001 0.001 0.009 0.985 0.005 0.001 62 E 0.001 0.001 0.007 0.984 0.006 0.002 63 L 0.001 0.001 0.004 0.966 0.012 0.017 64 G 0.005 0.001 0.004 0.134 0.066 0.790 65 Y 0.120 0.013 0.009 0.030 0.095 0.732 66 V 0.740 0.021 0.009 0.021 0.078 0.132 67 A 0.842 0.014 0.003 0.007 0.066 0.068 68 T 0.582 0.015 0.005 0.007 0.260 0.131 69 D 0.118 0.012 0.006 0.006 0.703 0.154 70 G 0.022 0.007 0.009 0.003 0.847 0.112 71 S 0.046 0.010 0.006 0.001 0.645 0.292 72 A 0.350 0.031 0.011 0.002 0.317 0.289 73 F 0.633 0.046 0.006 0.004 0.103 0.209 74 W 0.610 0.100 0.007 0.010 0.073 0.201 75 L 0.284 0.048 0.008 0.037 0.119 0.504 76 T 0.065 0.005 0.008 0.093 0.140 0.689 77 P 0.004 0.001 0.020 0.897 0.040 0.039 78 R 0.005 0.002 0.049 0.884 0.036 0.023 79 V 0.003 0.002 0.034 0.936 0.019 0.007 80 L 0.004 0.001 0.018 0.954 0.016 0.006 81 E 0.003 0.001 0.014 0.963 0.014 0.005 82 L 0.003 0.001 0.018 0.939 0.025 0.014 83 G 0.003 0.001 0.021 0.905 0.031 0.040 84 Y 0.003 0.001 0.055 0.891 0.033 0.017 85 S 0.003 0.001 0.038 0.924 0.023 0.011 86 Y 0.002 0.001 0.022 0.942 0.017 0.017 87 L 0.002 0.002 0.039 0.901 0.031 0.026 88 S 0.002 0.001 0.048 0.847 0.048 0.054 89 S 0.002 0.002 0.043 0.589 0.097 0.266 90 L 0.003 0.007 0.008 0.109 0.102 0.773 91 S 0.001 0.001 0.001 0.003 0.024 0.970