# TARGET T0381 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0381.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 175.891 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.023 0.816 0.002 0.003 0.005 0.001 0.001 0.003 0.099 0.012 0.021 0.014 2 T 0.001 0.018 0.903 0.001 0.004 0.004 0.001 0.001 0.001 0.040 0.016 0.002 0.010 3 A 0.001 0.014 0.660 0.001 0.033 0.013 0.001 0.001 0.001 0.153 0.118 0.003 0.005 4 T 0.001 0.012 0.593 0.001 0.034 0.015 0.001 0.001 0.001 0.213 0.121 0.003 0.007 5 E 0.001 0.011 0.668 0.001 0.011 0.008 0.001 0.001 0.001 0.272 0.023 0.003 0.002 6 P 0.001 0.020 0.834 0.001 0.013 0.016 0.001 0.001 0.001 0.073 0.033 0.001 0.008 7 T 0.001 0.043 0.547 0.001 0.107 0.072 0.001 0.001 0.001 0.102 0.111 0.005 0.010 8 E 0.001 0.013 0.226 0.001 0.334 0.134 0.001 0.001 0.001 0.107 0.170 0.006 0.008 9 K 0.001 0.015 0.258 0.001 0.261 0.187 0.001 0.001 0.001 0.092 0.169 0.005 0.010 10 I 0.001 0.045 0.394 0.002 0.114 0.132 0.001 0.001 0.002 0.164 0.128 0.004 0.015 11 L 0.001 0.012 0.651 0.001 0.010 0.021 0.001 0.001 0.001 0.248 0.048 0.006 0.002 12 P 0.001 0.013 0.620 0.001 0.014 0.028 0.001 0.001 0.001 0.136 0.184 0.001 0.004 13 S 0.001 0.008 0.761 0.001 0.008 0.023 0.001 0.001 0.001 0.167 0.031 0.001 0.001 14 P 0.001 0.002 0.161 0.001 0.125 0.384 0.001 0.001 0.001 0.092 0.235 0.001 0.001 15 D 0.001 0.016 0.087 0.001 0.100 0.486 0.001 0.001 0.001 0.085 0.222 0.001 0.002 16 Y 0.001 0.008 0.053 0.001 0.071 0.773 0.001 0.001 0.002 0.027 0.064 0.001 0.002 17 V 0.001 0.002 0.016 0.001 0.003 0.968 0.001 0.001 0.001 0.005 0.004 0.001 0.001 18 Q 0.001 0.001 0.005 0.001 0.002 0.989 0.001 0.001 0.001 0.002 0.002 0.001 0.001 19 S 0.001 0.001 0.003 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 A 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 22 R 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 23 G 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 24 L 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 A 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 26 V 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.006 0.001 0.001 27 I 0.001 0.001 0.001 0.001 0.002 0.982 0.001 0.001 0.001 0.001 0.014 0.001 0.001 28 R 0.001 0.001 0.002 0.001 0.006 0.945 0.001 0.001 0.001 0.002 0.046 0.001 0.001 29 C 0.001 0.001 0.004 0.001 0.014 0.906 0.001 0.001 0.001 0.002 0.073 0.001 0.001 30 F 0.001 0.002 0.080 0.001 0.022 0.757 0.001 0.001 0.001 0.048 0.089 0.001 0.001 31 D 0.001 0.013 0.141 0.001 0.086 0.430 0.001 0.001 0.003 0.067 0.257 0.001 0.002 32 H 0.001 0.005 0.119 0.001 0.106 0.340 0.001 0.001 0.002 0.092 0.332 0.001 0.002 33 R 0.001 0.007 0.194 0.001 0.082 0.239 0.001 0.001 0.003 0.165 0.306 0.002 0.001 34 N 0.001 0.007 0.255 0.001 0.107 0.135 0.001 0.001 0.002 0.183 0.307 0.001 0.002 35 Q 0.001 0.006 0.140 0.001 0.102 0.129 0.001 0.001 0.003 0.238 0.379 0.001 0.002 36 R 0.001 0.014 0.242 0.001 0.055 0.124 0.001 0.001 0.010 0.197 0.350 0.002 0.005 37 R 0.001 0.062 0.407 0.001 0.011 0.073 0.001 0.001 0.013 0.370 0.051 0.009 0.004 38 T 0.001 0.041 0.745 0.001 0.003 0.085 0.001 0.001 0.009 0.093 0.012 0.001 0.012 39 L 0.001 0.001 0.004 0.001 0.004 0.984 0.001 0.001 0.001 0.001 0.005 0.001 0.001 40 S 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 D 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 V 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 A 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 44 R 0.001 0.001 0.001 0.001 0.001 0.982 0.001 0.001 0.001 0.001 0.016 0.001 0.001 45 A 0.001 0.001 0.001 0.001 0.003 0.920 0.001 0.001 0.001 0.001 0.075 0.001 0.001 46 T 0.001 0.001 0.021 0.001 0.008 0.532 0.001 0.001 0.001 0.027 0.412 0.001 0.001 47 D 0.001 0.004 0.140 0.001 0.014 0.076 0.001 0.001 0.001 0.099 0.668 0.001 0.001 48 L 0.001 0.009 0.702 0.001 0.004 0.016 0.001 0.001 0.001 0.232 0.034 0.001 0.001 49 T 0.001 0.012 0.626 0.001 0.021 0.056 0.001 0.001 0.003 0.201 0.075 0.001 0.003 50 R 0.001 0.003 0.101 0.001 0.041 0.722 0.001 0.001 0.002 0.057 0.070 0.001 0.001 51 A 0.001 0.005 0.062 0.001 0.029 0.833 0.001 0.001 0.009 0.024 0.034 0.001 0.001 52 T 0.001 0.004 0.046 0.001 0.012 0.886 0.001 0.001 0.003 0.021 0.026 0.001 0.001 53 A 0.001 0.001 0.003 0.001 0.001 0.988 0.001 0.001 0.001 0.001 0.005 0.001 0.001 54 R 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 R 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 56 F 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 57 L 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 L 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 59 T 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.002 0.001 0.001 60 L 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 61 V 0.001 0.001 0.005 0.001 0.003 0.975 0.001 0.001 0.001 0.003 0.015 0.001 0.001 62 E 0.001 0.001 0.003 0.001 0.005 0.912 0.001 0.001 0.001 0.003 0.077 0.001 0.001 63 L 0.001 0.001 0.008 0.001 0.004 0.637 0.001 0.001 0.001 0.007 0.341 0.001 0.001 64 G 0.001 0.001 0.071 0.002 0.005 0.055 0.001 0.001 0.001 0.051 0.811 0.001 0.002 65 Y 0.007 0.019 0.556 0.001 0.016 0.029 0.001 0.001 0.007 0.071 0.142 0.093 0.056 66 V 0.062 0.051 0.168 0.003 0.010 0.014 0.007 0.001 0.021 0.056 0.037 0.097 0.471 67 A 0.116 0.009 0.206 0.017 0.008 0.010 0.014 0.002 0.024 0.047 0.069 0.283 0.195 68 T 0.120 0.043 0.079 0.004 0.007 0.007 0.023 0.001 0.014 0.096 0.111 0.084 0.411 69 D 0.008 0.016 0.335 0.027 0.006 0.004 0.002 0.001 0.003 0.209 0.233 0.105 0.053 70 G 0.001 0.002 0.133 0.008 0.005 0.001 0.001 0.001 0.001 0.296 0.542 0.005 0.009 71 S 0.010 0.006 0.122 0.002 0.006 0.002 0.001 0.001 0.001 0.209 0.555 0.059 0.028 72 A 0.076 0.046 0.155 0.002 0.015 0.004 0.007 0.001 0.003 0.183 0.111 0.079 0.318 73 F 0.177 0.021 0.258 0.021 0.015 0.004 0.017 0.001 0.004 0.082 0.035 0.189 0.176 74 W 0.106 0.060 0.225 0.003 0.008 0.004 0.016 0.001 0.003 0.041 0.014 0.191 0.329 75 L 0.027 0.064 0.481 0.007 0.005 0.011 0.005 0.001 0.003 0.081 0.014 0.069 0.233 76 T 0.004 0.008 0.678 0.004 0.006 0.085 0.001 0.001 0.002 0.137 0.016 0.022 0.037 77 P 0.001 0.001 0.011 0.001 0.005 0.966 0.001 0.001 0.001 0.006 0.010 0.001 0.001 78 R 0.001 0.001 0.003 0.001 0.006 0.985 0.001 0.001 0.001 0.001 0.003 0.001 0.001 79 V 0.001 0.001 0.002 0.001 0.008 0.986 0.001 0.001 0.001 0.001 0.001 0.001 0.001 80 L 0.001 0.001 0.002 0.001 0.002 0.991 0.001 0.001 0.001 0.001 0.002 0.001 0.001 81 E 0.001 0.001 0.002 0.001 0.002 0.979 0.001 0.001 0.001 0.001 0.012 0.001 0.001 82 L 0.001 0.001 0.005 0.001 0.002 0.954 0.001 0.001 0.001 0.003 0.033 0.001 0.001 83 G 0.001 0.001 0.014 0.001 0.003 0.967 0.001 0.001 0.001 0.003 0.010 0.001 0.001 84 Y 0.001 0.001 0.005 0.001 0.016 0.968 0.001 0.001 0.001 0.003 0.006 0.001 0.001 85 S 0.001 0.001 0.004 0.001 0.020 0.961 0.001 0.001 0.001 0.002 0.011 0.001 0.001 86 Y 0.001 0.001 0.006 0.001 0.033 0.938 0.001 0.001 0.001 0.002 0.019 0.001 0.001 87 L 0.001 0.001 0.012 0.001 0.050 0.881 0.001 0.001 0.001 0.006 0.047 0.001 0.002 88 S 0.001 0.002 0.016 0.001 0.089 0.671 0.001 0.001 0.001 0.011 0.206 0.002 0.001 89 S 0.001 0.001 0.029 0.001 0.079 0.451 0.001 0.001 0.001 0.022 0.417 0.001 0.001 90 L 0.001 0.008 0.506 0.001 0.017 0.102 0.001 0.001 0.001 0.305 0.060 0.001 0.001 91 S 0.001 0.004 0.845 0.001 0.023 0.026 0.001 0.001 0.001 0.059 0.042 0.001 0.001