# TARGET T0381 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0381.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 175.891 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.114 0.305 0.378 0.069 0.053 0.032 0.012 0.003 0.030 0.003 0.001 2 T 0.076 0.226 0.474 0.050 0.037 0.069 0.017 0.002 0.042 0.004 0.001 3 A 0.304 0.136 0.355 0.108 0.036 0.027 0.009 0.008 0.008 0.008 0.003 4 T 0.224 0.259 0.322 0.088 0.035 0.028 0.006 0.003 0.032 0.003 0.001 5 E 0.082 0.104 0.671 0.008 0.023 0.025 0.010 0.001 0.069 0.005 0.002 6 P 0.273 0.010 0.617 0.022 0.001 0.024 0.001 0.001 0.002 0.001 0.047 7 T 0.415 0.071 0.282 0.150 0.023 0.024 0.008 0.011 0.010 0.004 0.002 8 E 0.442 0.100 0.213 0.099 0.056 0.013 0.026 0.019 0.015 0.016 0.001 9 K 0.458 0.080 0.237 0.136 0.027 0.016 0.022 0.008 0.010 0.004 0.002 10 I 0.252 0.146 0.302 0.203 0.017 0.045 0.013 0.003 0.017 0.001 0.002 11 L 0.029 0.327 0.464 0.002 0.030 0.024 0.008 0.001 0.114 0.001 0.001 12 P 0.149 0.006 0.714 0.027 0.001 0.055 0.001 0.001 0.001 0.001 0.046 13 S 0.035 0.125 0.666 0.004 0.053 0.023 0.003 0.001 0.083 0.007 0.001 14 P 0.944 0.001 0.032 0.015 0.001 0.002 0.001 0.001 0.001 0.001 0.005 15 D 0.745 0.010 0.034 0.175 0.007 0.005 0.010 0.009 0.003 0.002 0.001 16 Y 0.904 0.007 0.017 0.053 0.004 0.003 0.003 0.005 0.002 0.003 0.001 17 V 0.960 0.006 0.016 0.010 0.001 0.005 0.001 0.001 0.001 0.001 0.001 18 Q 0.991 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 S 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 22 R 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 23 G 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 24 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 I 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 R 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 C 0.978 0.001 0.001 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 F 0.795 0.005 0.007 0.185 0.001 0.002 0.001 0.001 0.002 0.001 0.001 31 D 0.746 0.026 0.064 0.117 0.011 0.011 0.016 0.003 0.005 0.002 0.001 32 H 0.481 0.026 0.062 0.352 0.013 0.016 0.030 0.009 0.007 0.002 0.001 33 R 0.411 0.068 0.155 0.190 0.040 0.033 0.059 0.008 0.023 0.012 0.001 34 N 0.162 0.032 0.098 0.312 0.020 0.093 0.225 0.017 0.036 0.003 0.001 35 Q 0.287 0.067 0.134 0.287 0.036 0.026 0.114 0.027 0.015 0.006 0.001 36 R 0.284 0.115 0.124 0.317 0.031 0.023 0.047 0.036 0.010 0.012 0.001 37 R 0.058 0.335 0.410 0.063 0.059 0.044 0.014 0.001 0.015 0.001 0.001 38 T 0.019 0.115 0.721 0.003 0.067 0.053 0.001 0.001 0.017 0.004 0.001 39 L 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 S 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 D 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 A 0.974 0.001 0.001 0.025 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 T 0.219 0.001 0.002 0.778 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 D 0.007 0.001 0.001 0.012 0.001 0.004 0.927 0.047 0.002 0.001 0.001 48 L 0.071 0.195 0.571 0.037 0.013 0.076 0.011 0.001 0.023 0.001 0.001 49 T 0.399 0.034 0.428 0.045 0.012 0.061 0.006 0.005 0.004 0.004 0.003 50 R 0.909 0.028 0.027 0.012 0.009 0.004 0.002 0.002 0.003 0.003 0.001 51 A 0.976 0.003 0.014 0.004 0.001 0.002 0.001 0.001 0.001 0.001 0.001 52 T 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 53 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 56 F 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 57 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 59 T 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 60 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 61 V 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 62 E 0.990 0.002 0.002 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 63 L 0.483 0.002 0.005 0.506 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 G 0.049 0.002 0.007 0.028 0.016 0.001 0.200 0.668 0.002 0.029 0.001 65 Y 0.252 0.193 0.288 0.095 0.082 0.053 0.022 0.002 0.006 0.006 0.001 66 V 0.056 0.657 0.148 0.045 0.039 0.032 0.001 0.001 0.022 0.001 0.001 67 A 0.082 0.481 0.248 0.034 0.093 0.041 0.002 0.001 0.016 0.002 0.001 68 T 0.141 0.597 0.095 0.050 0.030 0.037 0.004 0.001 0.045 0.001 0.001 69 D 0.046 0.114 0.106 0.156 0.035 0.061 0.238 0.004 0.233 0.007 0.001 70 G 0.067 0.003 0.043 0.023 0.031 0.002 0.099 0.500 0.001 0.230 0.002 71 S 0.405 0.111 0.124 0.270 0.037 0.013 0.015 0.012 0.004 0.009 0.001 72 A 0.187 0.357 0.197 0.121 0.064 0.024 0.021 0.004 0.021 0.003 0.001 73 F 0.057 0.479 0.234 0.064 0.062 0.049 0.021 0.003 0.029 0.002 0.001 74 W 0.040 0.439 0.240 0.011 0.039 0.081 0.018 0.001 0.129 0.002 0.001 75 L 0.249 0.131 0.443 0.056 0.025 0.068 0.005 0.002 0.005 0.004 0.011 76 T 0.468 0.131 0.265 0.005 0.037 0.017 0.003 0.001 0.065 0.007 0.001 77 P 0.989 0.001 0.006 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.002 78 R 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 79 V 0.994 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 80 L 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 81 E 0.994 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 82 L 0.935 0.001 0.001 0.062 0.001 0.001 0.001 0.001 0.001 0.001 0.001 83 G 0.963 0.002 0.004 0.013 0.001 0.001 0.006 0.008 0.001 0.001 0.001 84 Y 0.981 0.002 0.002 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 85 S 0.983 0.002 0.002 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 86 Y 0.950 0.003 0.002 0.042 0.001 0.001 0.001 0.001 0.001 0.001 0.001 87 L 0.882 0.011 0.019 0.076 0.001 0.005 0.002 0.001 0.003 0.001 0.001 88 S 0.866 0.017 0.036 0.064 0.005 0.003 0.006 0.001 0.001 0.001 0.001 89 S 0.532 0.023 0.038 0.333 0.011 0.013 0.030 0.009 0.011 0.001 0.001 90 L 0.274 0.133 0.253 0.215 0.013 0.048 0.014 0.002 0.048 0.001 0.001 91 S 0.404 0.083 0.185 0.146 0.037 0.038 0.055 0.015 0.014 0.023 0.001