# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g7uA 257 6.90e-13 1mkmA 249 1.52e-08 a.4.5.33,d.110.2.2 79242,79243 1q1hA 110 2.04e-05 a.4.5.41 95580 2fbhA 146 1.77e-04 1ulyA 192 1.39e-03 2b0lA 102 2.26e-03 1sfxA 109 2.91e-03 a.4.5.50 105505 2a61A 145 3.22e-03 1j5yA 187 3.26e-03 a.4.5.1,d.94.2.1 71592,71593 1lj9A 144 5.66e-03 a.4.5.28 78035 2fnaA 357 5.70e-03 1lnwA 147 5.91e-03 a.4.5.28 78104 1r1tA 122 9.57e-03 a.4.5.5 104769 1s3jA 155 1.13e-02 a.4.5.28 98437 1smtA 122 2.06e-02 1smtA a.4.5.5 16109 1qzzA 374 2.17e-02 a.4.5.29,c.66.1.12 96719,96720 2gauA 232 2.49e-02 1u2wA 122 2.75e-02 2fxaA 207 4.26e-02 2ethA 154 4.71e-02 2fu4A 83 5.30e-02 1j75A 67 6.93e-02 a.4.5.19 62673 1bia 321 7.20e-02 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1qbjA 81 7.48e-02 1qbjA a.4.5.19 16155 1lvaA 258 9.69e-02 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1i6xA 209 1.05e-01 a.4.5.4,b.82.3.2 83673,83674 1hw5A 210 1.19e-01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1fp2A 352 1.19e-01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1r1uA 106 1.45e-01 a.4.5.5 104771 1orjA 130 1.71e-01 a.24.19.1 93456 1ldjA 760 1.86e-01 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1r7jA 95 1.91e-01 a.4.5.49 104836 1jgsA 138 2.87e-01 a.4.5.28 66683 1xnpA 202 3.19e-01 1wdvA 152 3.95e-01 1on2A 142 4.16e-01 a.4.5.24,a.76.1.1 87103,87104 2fbiA 142 4.34e-01 1mw9X 592 4.52e-01 e.10.1.1 91480 1j7gA 144 4.66e-01 c.110.1.1 84130 1mzbA 136 6.68e-01 a.4.5.42 91497 1hw1A 239 9.57e-01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1wojA 214 9.59e-01 2cohA 202 1.01e+00 1hq0A 295 1.12e+00 1hzgA d.194.1.1 61122 1yyvA 131 1.23e+00 1xd7A 145 1.36e+00 a.4.5.55 109566 1p4xA 250 1.38e+00 a.4.5.28,a.4.5.28 87784,87785 1bgvA 449 1.77e+00 1k89 c.2.1.7,c.58.1.1 30217,33865 2bjcA 62 1.85e+00 1in4A 334 1.93e+00 1hqcA a.4.5.11,c.37.1.20 62597,62598 2es9A 115 2.13e+00 2h6bA 250 2.16e+00 1z91A 147 2.23e+00 1in6A 334 2.55e+00 1hqcA a.4.5.11,c.37.1.20 62601,62602 1eyhA 144 2.56e+00 1eduA a.118.9.1 19214 1y0uA 96 2.94e+00 2eshA 118 3.40e+00 1zb1A 392 3.41e+00 1ed1A 135 3.99e+00 1hiwA a.61.1.1 18130 1pbtA 244 4.04e+00 c.124.1.1 94416 2bgcA 238 4.28e+00 1sfuA 75 4.31e+00 a.4.5.19 105503 1vl1A 232 4.41e+00 c.124.1.1 108707 1tm9A 137 4.57e+00 a.225.1.1 107150 2csbA 519 4.85e+00 1fy7A 278 5.00e+00 1fy7A d.108.1.1 40817 1w36B 1180 5.56e+00 1za0A 275 6.18e+00 2guhA 214 6.31e+00 1bjaA 95 6.43e+00 1bjaA a.4.5.9 16122 1bg2 325 6.55e+00 1bg2 c.37.1.9 32189 2faoA 309 6.57e+00 2acjA 66 6.65e+00 1ymiA 334 6.67e+00 2fokA 579 7.65e+00 2fokA a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12 16131,16132,16133,33323 1v7nV 163 7.90e+00 a.26.1.2 100476 1ri7A 171 7.97e+00 a.4.5.32,d.58.4.2 97504,97505 1xkgA 312 8.28e+00 2ex2A 458 8.61e+00 1g7dA 106 9.10e+00 1g7dA a.71.1.1 18318 2b5aA 77 9.70e+00 1ufmA 84 9.70e+00 a.4.5.47 107816 1omiA 248 9.74e+00 b.82.3.3,a.4.5.4 87079,87080 2cw8A 537 9.86e+00 1b4vA 504 9.90e+00 1b8sA c.3.1.2,d.16.1.1 30334,37865 1mxtA 504 1.00e+01 c.3.1.2,d.16.1.1 79671,79672 2dtr 226 1.01e+01 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1yna 194 1.03e+01 1axkA b.29.1.11 24335 1wj5A 120 1.07e+01 1meoA 209 1.07e+01 c.65.1.1 79035 1pxgA 382 1.08e+01 c.1.20.1 95287 1zj6A 187 1.09e+01 1n4wA 504 1.10e+01 c.3.1.2,d.16.1.1 91676,91677 1tkiA 321 1.11e+01 1tkiA d.144.1.7 41638 1li5A 461 1.12e+01 a.27.1.1,c.26.1.1 73912,73913 1tqgA 105 1.13e+01 a.24.10.3 107224 1jkeA 145 1.16e+01 c.110.1.1 66791 2fbkA 181 1.17e+01 1t8sA 484 1.30e+01 c.56.2.1 106679 1a79A 171 1.32e+01 1a79A c.52.2.1,d.75.1.1 33340,39739 2gu2A 312 1.43e+01 2cz2A 223 1.46e+01 2cujA 108 1.46e+01 1li5B 461 1.55e+01 a.27.1.1,c.26.1.1 73914,73915 2h17A 181 1.60e+01 2anuA 255 1.67e+01 1xs5A 241 1.68e+01 1a04A 215 1.73e+01 1a04A a.4.6.2,c.23.1.1 16234,31089 2comA 124 1.75e+01 1hrdA 449 1.77e+01 1k89 c.2.1.7,c.58.1.1 30219,33867 1sfe 180 1.77e+01 1sfe a.4.2.1,c.55.7.1 16073,33748 1t8qA 336 1.80e+01 c.1.18.3 106669 2ab0A 205 1.82e+01 1ewqA 765 1.82e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1ub9A 100 1.83e+01 a.4.5.28 99159 1repC 251 1.84e+01 1repC a.4.5.10,a.4.5.10 16125,16126 2f2eA 146 1.90e+01 1ovnA 248 1.96e+01 a.71.1.1,c.47.1.7 93602,93603 1cjgA 62 2.01e+01 1pru a.35.1.5 17112 1k8qA 377 2.06e+01 c.69.1.6 72177 1us8A 147 2.09e+01 c.37.1.12 99859 1xvqA 175 2.10e+01 1t9kA 347 2.11e+01 c.124.1.5 106721 1bg4 302 2.17e+01 1taxA c.1.8.3 28806 1adt 356 2.29e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17887,45362,45368 1zx4A 192 2.34e+01 2brqA 97 2.34e+01 1y791 680 2.43e+01 1mzhA 225 2.45e+01 c.1.10.1 79698 1ydyA 356 2.50e+01 2h3bA 494 2.61e+01 1xruA 282 2.63e+01 1nm8A 616 2.65e+01 c.43.1.3,c.43.1.3 85872,85873 1b24A 188 2.68e+01 1b24A d.95.2.1,d.95.2.1 40573,40574 2db0A 253 2.75e+01 2d48A 129 2.76e+01 2cfxA 144 2.84e+01 1w99A 558 2.89e+01 1d7oA 297 2.91e+01 1enp c.2.1.2 29907 1pb6A 212 2.91e+01 a.4.1.9,a.121.1.1 88017,88018 1opc 110 2.92e+01 1opc a.4.6.1 16231 1x8mA 288 2.96e+01 b.82.1.13 109516 1i7nA 309 3.01e+01 c.30.1.5,d.142.1.3 83681,83682 1b0nA 111 3.05e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1hlvA 131 3.11e+01 a.4.1.7,a.4.1.7 65854,65855 1okrA 123 3.15e+01 a.4.5.39 93269 2tct 207 3.16e+01 2tct a.4.1.9,a.121.1.1 16063,19240 1l7mA 211 3.19e+01 c.108.1.4 73664 1t33A 224 3.21e+01 a.4.1.9,a.121.1.1 106295,106296 1enp 312 3.32e+01 1enp c.2.1.2 29906 1m33A 258 3.39e+01 c.69.1.26 78514 1tbxA 99 3.41e+01 a.4.5.48 106748 1r4aA 165 3.48e+01 c.37.1.8 96986 2bjfA 329 3.57e+01 1xl7A 612 3.58e+01 1dwkA 156 3.58e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 2acvA 463 3.61e+01 1stzA 338 3.62e+01 a.4.5.51,d.110.2.3 106009,106010 1j97A 211 3.64e+01 1f5sA c.108.1.4 62753 1ly1A 181 3.67e+01 c.37.1.1 74334 1aisB 200 3.86e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1sfnA 246 3.88e+01 b.82.1.11 105496 2g6tA 306 3.91e+01 2gm3A 175 3.93e+01 1fkmA 396 3.93e+01 1fkmA a.69.2.1,a.69.2.1 18315,18316 1xn7A 78 3.94e+01 1ia8A 289 4.12e+01 1ia8A d.144.1.7 62112 1tqmA 282 4.21e+01 a.4.5.56,d.144.1.9 107236,107237 1xwnA 174 4.29e+01 1hrnA 337 4.30e+01 1smrA b.50.1.2 26869 1z67A 135 4.37e+01 1zdyA 307 4.47e+01 1pzxA 289 4.47e+01 c.119.1.1 95484 1w19A 160 4.52e+01 1z7dA 433 4.53e+01 1d0dA 60 4.54e+01 1kigI g.8.1.2 44566 1fw1A 216 4.56e+01 a.45.1.1,c.47.1.5 60051,60052 1tc5A 194 4.71e+01 c.110.1.1 106752 2bb6A 414 4.72e+01 1nuuA 252 4.83e+01 c.26.1.3 86209 1jkmB 361 4.86e+01 1jkmA c.69.1.2 34634 1dekA 241 4.88e+01 1dekA c.37.1.1 31842 1a6s 87 5.08e+01 1a6s a.61.1.4 18134 2b33A 140 5.23e+01 2a5sA 284 5.24e+01 2c78A 405 5.38e+01 1sffA 426 5.42e+01 c.67.1.4 105482 1w44A 331 5.42e+01 1je8A 82 5.44e+01 a.4.6.2 77108 2f1cX 286 5.49e+01 1l9kA 305 5.49e+01 c.66.1.25 84569 1bf2 750 5.63e+01 1bf2 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 1z77A 200 5.71e+01 1sjdA 368 5.75e+01 c.1.11.2,d.54.1.1 105632,105633 1p99A 295 5.83e+01 c.94.1.1 94384 2akaB 299 5.89e+01 1rl2A 137 6.00e+01 1rl2A b.34.5.3,b.40.4.5 24610,25342 1m2rA 327 6.01e+01 d.144.1.7 84760 1s5jA 847 6.05e+01 2f4iA 197 6.07e+01 1zljA 78 6.11e+01 2b9eA 303 6.15e+01 2b3nA 159 6.16e+01 1om1A 332 6.18e+01 d.144.1.7 93347 2fgoA 82 6.18e+01 1nb8A 353 6.26e+01 d.3.1.9 80385 1t1uA 639 6.27e+01 1j1xH 114 6.31e+01 b.1.1.1 77063 2al6A 375 6.40e+01 1uocA 289 6.40e+01 c.55.3.9 99686 1zarA 282 6.41e+01 1ym5A 300 6.41e+01 1p1xA 260 6.55e+01 c.1.10.1 104060 1utxA 66 6.55e+01 a.35.1.3 108034 2be1A 339 6.74e+01 1o97D 320 6.77e+01 c.26.2.3,c.31.1.2 81233,81234 2fug5 207 6.86e+01 1io0A 185 6.89e+01 c.10.1.1 76753 1dceB 331 6.90e+01 1dceB a.102.4.3 18872 1i60A 278 6.91e+01 c.1.15.4 71118 1pbv 195 6.92e+01 1pbv a.118.3.1 19179 1p5hA 428 6.99e+01 c.123.1.1 87802 1a6i 217 7.04e+01 2tct a.4.1.9,a.121.1.1 16066,19243 1m7kA 99 7.05e+01 a.7.7.1 74573 2arcA 164 7.22e+01 2arcA b.82.4.1 28148 2bkaA 242 7.24e+01 1xo5A 183 7.37e+01 1mkyA 439 7.42e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1bl0A 129 7.58e+01 1d5yA a.4.1.8,a.4.1.8 16053,16054 1o3yA 166 7.58e+01 c.37.1.8 86618 1hurA 180 7.59e+01 1hurA c.37.1.8 32052 1ltqA 301 7.61e+01 c.108.1.9,c.37.1.1 78208,78209 1fp3A 402 7.62e+01 1fp3A a.102.1.3 18842 1syyA 346 7.66e+01 a.25.1.2 106126 1auvA 311 7.68e+01 1auvA c.30.1.5,d.142.1.3 31723,41558 1u2xA 474 7.71e+01 c.72.1.3 107622 1y7yA 74 7.75e+01 1b74A 254 7.87e+01 1b74A c.78.2.1,c.78.2.1 35264,35265 1pvxA 194 8.00e+01 1axkA b.29.1.11 24341 2a10A 125 8.02e+01 1qwrA 319 8.08e+01 b.82.1.3 96491 1anv 356 8.13e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17890,45365,45371 1lvoA 302 8.13e+01 b.47.1.4 74284 1z0wA 207 8.17e+01 1zwyA 185 8.38e+01 2axwA 134 8.42e+01 1klxA 138 8.46e+01 a.118.18.1 77440 1rwsA 77 8.46e+01 d.15.3.2 97991 1fjlA 81 8.47e+01 2hddA a.4.1.1 16017 2dbbA 151 8.50e+01 1ha3A 405 8.65e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 60869,60870,60871 1x0vA 354 8.66e+01 1wmwA 330 8.83e+01 1nbfA 353 8.88e+01 d.3.1.9 80387 1lucB 324 8.93e+01 1lucA c.1.16.1 29548 2f46A 156 8.94e+01