CreatePredAlphaCost pred_alpha2k alpha11 T0380.t2k.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha04 alpha11 T0380.t04.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha06 alpha11 T0380.t06.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 20 dry6.5 40 dry8 20 dry12 5 \ phobic_fit 4 \ sidechain 5 \ n_ca_c 20 bad_peptide 20 \ bystroff 5 \ soft_clashes 30 backbone_clashes 2 \ break 100 \ pred_alpha2k 2 \ pred_alpha04 2 \ pred_alpha06 2 \ constraints 10 \ hbond_geom 5 \ hbond_geom_backbone 10 \ hbond_geom_beta 40 \ hbond_geom_beta_pair 80 \ missing_atoms 1 # from decoys/try6-opt2.helices HelixConstraint M1 S17 1 # extended as in try4 HelixConstraint T55 N64 1 HelixConstraint D91 W99 1 HelixConstraint N134 Y145 1 # from decoys/try4-opt2.sheets SheetConstraint K18 G26 R38 Y30 hbond V20 1 SheetConstraint V20 T24 F71 I67 hbond M21 1 SheetConstraint K40 D42 W48 K46 hbond K40 1 SheetConstraint K45 T53 A123 D115 hbond F47 1 SheetConstraint N65 V72 I86 G79 hbond I67 1 SheetConstraint F77 G84 H131 E124 hbond M81 1 SheetConstraint V83 L89 E124 A118 hbond T85 1 # omit edge strand---make it a helix # SheetConstraint W125 R130 K138 K133 hbond G126 1