# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fhqA 141 1.86e-14 1dnlA 199 4.88e-13 1ci0A b.45.1.1 25753 1g79A 218 5.53e-13 1ci0A b.45.1.1 25752 1nrgA 261 3.09e-09 b.45.1.1 80694 1rfeA 162 2.82e-08 1t9mA 214 9.43e-08 2fg9A 178 2.11e-07 1ty9A 222 3.49e-07 2asfA 137 3.61e-06 1ci0A 228 1.13e-05 1ci0A b.45.1.1 25750 1vl7A 157 4.31e-05 b.45.1.1 108732 1axj 122 8.53e-05 1axj b.45.1.1 25749 2aq6A 147 1.01e-04 1flmA 122 1.83e-04 1axj b.45.1.1 25747 1w9aA 147 3.52e-04 1xxoA 147 3.82e-04 2furA 209 7.39e-04 1w3oA 216 5.35e-03 2arzA 247 1.60e-02 1ejeA 192 3.88e-02 1ejeA b.45.1.2 25757 1xhnA 184 3.92e-02 2bgiA 272 5.27e-01 1j58A 385 1.78e+00 b.82.1.2 71531 1ww7A 160 5.68e+00 1g5vA 88 6.78e+00 1g5vA b.34.9.1 60292 1pfxL 146 7.45e+00 1cfi g.3.11.1,g.3.11.1,g.32.1.1 44207,44208,44973 1mhnA 59 8.10e+00 b.34.9.1 84964 1ujqA 305 1.13e+01 c.1.12.7 99463 1w8oA 601 1.25e+01 1b54 257 1.32e+01 1ct5A c.1.6.2 28664 1eur 365 1.46e+01 1eut b.68.1.1 27607 1j27A 102 1.52e+01 d.58.50.1 90778 1nftA 329 1.67e+01 1nnt c.94.1.2 35881 1k0nA 241 1.82e+01 a.45.1.1,c.47.1.5 67953,67954 1eut 605 1.87e+01 1eut b.1.18.2,b.18.1.1,b.68.1.1 21891,23712,27609 1pvtA 238 2.13e+01 c.74.1.1 95189 1k0mA 241 2.20e+01 a.45.1.1,c.47.1.5 67949,67950 1nnt 328 2.32e+01 1nnt c.94.1.2 35884 1euu 605 2.40e+01 1eut b.1.18.2,b.18.1.1,b.68.1.1 21892,23713,27610 1tfaA 329 2.41e+01 1nnt c.94.1.2 35880 1n9lA 109 2.49e+01 d.110.3.6 85468 1j5kA 89 2.57e+01 d.51.1.1 71565 1uirA 314 2.63e+01 c.66.1.17 99429 1wcqA 601 2.70e+01 1lepA 99 2.72e+01 1lepA b.35.1.1 24649 1ct5A 256 2.94e+01 1ct5A c.1.6.2 28663 2gnqA 336 3.00e+01 1iejA 332 3.36e+01 1nnt c.94.1.2 62328 1kijA 390 3.59e+01 d.14.1.3,d.122.1.2 72514,72515 2ucz 165 3.69e+01 1u9aA d.20.1.1 38330 1gyfA 62 3.73e+01 1gyfA d.76.1.1 39749 1kpuA 274 3.84e+01 b.1.1.2,d.19.1.1 84456,84457 2fauA 341 4.10e+01 1lk2A 274 4.22e+01 b.1.1.2,d.19.1.1 91056,91057 1g7pA 274 4.22e+01 b.1.1.2,d.19.1.1 70153,70154 1fzkA 274 4.23e+01 1agdA b.1.1.2,d.19.1.1 60149,60150 1ne9A 335 4.41e+01 d.108.1.4,d.108.1.4 91839,91840 1tie 172 4.44e+01 1wba b.42.4.1 25592 1gotB 340 4.57e+01 1tbgA b.69.4.1 27648 1ye8A 178 4.69e+01 1kkcA 221 4.77e+01 a.2.11.1,d.44.1.1 68660,68661 1j6uA 469 4.91e+01 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 1iu8A 206 4.97e+01 c.56.4.1 71436 1oj4A 283 5.05e+01 d.14.1.5,d.58.26.5 93083,93084 1zvkA 358 5.10e+01 1w66A 232 5.12e+01 2ashA 381 5.13e+01 1twfK 120 5.18e+01 2bwqA 129 5.30e+01 1rz3A 201 5.38e+01 c.37.1.6 98132 1yfnA 118 5.45e+01 1syxB 86 5.52e+01 1pysA 350 5.59e+01 1pysA d.104.1.1 40775 1p3wA 404 5.79e+01 c.67.1.3 87752 1agqA 135 5.81e+01 1agqA g.17.1.2 44789 1oa4A 222 5.88e+01 b.29.1.11 86731 1igwA 434 5.89e+01 c.1.12.7 62370 1z08A 170 5.95e+01 1i50K 120 5.97e+01 d.74.3.2 61765 1x23A 155 6.05e+01 1pse 69 6.33e+01 1pse b.34.4.2 24595 2ag5A 246 6.38e+01 1qm4A 396 6.44e+01 1mxb d.130.1.1,d.130.1.1,d.130.1.1 41350,41351,41352 1a0rB 340 6.46e+01 1tbgA b.69.4.1 27658 1klnA 605 6.48e+01 1xwl c.55.3.5,e.8.1.1 33693,42986 1tbgA 340 6.79e+01 1tbgA b.69.4.1 27649 1o4tA 133 6.93e+01 b.82.1.9 86622 1z4rA 168 7.04e+01 2cr9A 139 7.11e+01 1jlyA 304 7.16e+01 1jlyA b.42.3.1,b.42.3.1 25587,25588 1tr8A 102 7.19e+01 1b7yA 350 7.23e+01 1pysA d.104.1.1 40776 1fts 295 7.23e+01 1ng1 a.24.13.1,c.37.1.10 16968,32279 1ecfB 504 7.26e+01 1ecfB c.61.1.1,d.153.1.1 34054,41821 1ecfA 504 7.29e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1ylnA 252 7.64e+01 1wbiA 129 7.66e+01 1l1qA 186 7.84e+01 c.61.1.1 77653 1wi6A 88 7.84e+01 2bcjB 340 8.02e+01 2coqA 108 8.06e+01 1ywxA 102 8.16e+01 1inlA 296 8.20e+01 c.66.1.17 66220 1j5yA 187 8.35e+01 a.4.5.1,d.94.2.1 71592,71593 1xfkA 336 8.53e+01 2cwzA 141 8.73e+01 1jq3A 296 8.87e+01 c.66.1.17 67079 1mgpA 313 8.94e+01 c.119.1.1 79098