# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fhqA 141 1.29e-15 1g79A 218 4.64e-14 1ci0A b.45.1.1 25752 1dnlA 199 5.06e-14 1ci0A b.45.1.1 25753 1nrgA 261 8.03e-10 b.45.1.1 80694 1t9mA 214 1.61e-08 1rfeA 162 2.04e-08 2fg9A 178 3.73e-08 1ty9A 222 1.22e-07 2asfA 137 2.93e-06 1ci0A 228 4.92e-06 1ci0A b.45.1.1 25750 1vl7A 157 3.91e-05 b.45.1.1 108732 1axj 122 8.52e-05 1axj b.45.1.1 25749 2aq6A 147 9.24e-05 1flmA 122 1.19e-04 1axj b.45.1.1 25747 1w9aA 147 1.23e-04 1xxoA 147 1.37e-04 2furA 209 1.30e-03 1w3oA 216 4.01e-03 1ejeA 192 2.36e-02 1ejeA b.45.1.2 25757 1xhnA 184 4.63e-02 2arzA 247 6.33e-02 2bgiA 272 3.13e-01 1ujqA 305 4.37e+00 c.1.12.7 99463 1j58A 385 5.49e+00 b.82.1.2 71531 1ww7A 160 8.63e+00 1pse 69 9.12e+00 1pse b.34.4.2 24595 1w66A 232 1.07e+01 1tie 172 1.13e+01 1wba b.42.4.1 25592 1s2wA 295 1.27e+01 c.1.12.7 98407 1ne9A 335 1.47e+01 d.108.1.4,d.108.1.4 91839,91840 2etvA 346 1.49e+01 1k0mA 241 1.79e+01 a.45.1.1,c.47.1.5 67949,67950 1pfxL 146 1.80e+01 1cfi g.3.11.1,g.3.11.1,g.32.1.1 44207,44208,44973 1k0nA 241 1.81e+01 a.45.1.1,c.47.1.5 67953,67954 1h2bA 359 1.82e+01 b.35.1.2,c.2.1.1 90543,90544 1mwsA 646 1.83e+01 d.17.4.5,d.175.1.1,e.3.1.1 79592,79593,79594 1nnt 328 1.94e+01 1nnt c.94.1.2 35884 1eur 365 1.97e+01 1eut b.68.1.1 27607 1qp2A 70 2.04e+01 1pse b.34.4.2 24596 1nmeA 146 2.19e+01 c.17.1.1 85874 1twfK 120 2.29e+01 1w8oA 601 2.40e+01 1i50K 120 2.47e+01 d.74.3.2 61765 1j5kA 89 2.50e+01 d.51.1.1 71565 1x88A 359 2.53e+01 1g5vA 88 2.55e+01 1g5vA b.34.9.1 60292 1euu 605 2.60e+01 1eut b.1.18.2,b.18.1.1,b.68.1.1 21892,23713,27610 1pauA 147 2.68e+01 1pauA c.17.1.1 30994 1r17A 343 2.68e+01 b.2.3.4,b.2.3.4 96796,96797 1rz3A 201 2.70e+01 c.37.1.6 98132 1z08A 170 2.73e+01 1b1zA 219 2.83e+01 3seb b.40.2.2,d.15.6.1 25216,37805 2ucz 165 2.85e+01 1u9aA d.20.1.1 38330 1fnuA 221 3.00e+01 3seb b.40.2.2,d.15.6.1 25212,37801 1b54 257 3.01e+01 1ct5A c.1.6.2 28664 1mhnA 59 3.10e+01 b.34.9.1 84964 1cp3A 277 3.18e+01 1pauA c.17.1.1 30992 1j27A 102 3.25e+01 d.58.50.1 90778 1ct5A 256 3.26e+01 1ct5A c.1.6.2 28663 2ag5A 246 3.34e+01 2gw8A 114 3.63e+01 1iu8A 206 3.66e+01 c.56.4.1 71436 2fauA 341 3.74e+01 1syxB 86 3.79e+01 1f08A 148 3.81e+01 1f08A d.89.1.2 59564 1tfaA 329 3.82e+01 1nnt c.94.1.2 35880 1wcqA 601 3.88e+01 1nftA 329 3.96e+01 1nnt c.94.1.2 35881 1iejA 332 4.00e+01 1nnt c.94.1.2 62328 1jeyA 609 4.01e+01 1jeqA b.131.1.1,c.62.1.3 90370,90371 1vqqA 646 4.04e+01 1o4uA 285 4.12e+01 c.1.17.1,d.41.2.1 86624,86625 1pvtA 238 4.20e+01 c.74.1.1 95189 2exnA 136 4.41e+01 2ch0A 133 4.50e+01 1agqA 135 4.63e+01 1agqA g.17.1.2 44789 1om0A 274 4.67e+01 c.1.8.5 87058 1ta3A 274 4.69e+01 c.1.8.5 106731 1zzkA 82 4.70e+01 1gnkA 112 4.73e+01 2pii d.58.5.1 39073 1kkcA 221 4.91e+01 a.2.11.1,d.44.1.1 68660,68661 2ashA 381 4.94e+01 1klnA 605 5.31e+01 1xwl c.55.3.5,e.8.1.1 33693,42986 1zvkA 358 5.51e+01 2df7A 458 5.71e+01 1lepA 99 5.85e+01 1lepA b.35.1.1 24649 1ksyA 154 6.07e+01 d.89.1.2 72948 1fzkA 274 6.09e+01 1agdA b.1.1.2,d.19.1.1 60149,60150 1g7pA 274 6.32e+01 b.1.1.2,d.19.1.1 70153,70154 1lk2A 274 6.32e+01 b.1.1.2,d.19.1.1 91056,91057 1ye8A 178 6.34e+01 1kpuA 274 6.35e+01 b.1.1.2,d.19.1.1 84456,84457 1oo0A 147 6.49e+01 d.232.1.1 87182 1d8yA 605 6.51e+01 1xwl c.55.3.5,e.8.1.1 33684,42977 1vphA 149 6.60e+01 1n9lA 109 6.66e+01 d.110.3.6 85468 1vc1A 110 6.81e+01 c.13.2.1 108493 1ujmA 342 6.81e+01 2fp8A 322 6.85e+01 1rq2A 382 6.85e+01 c.32.1.1,d.79.2.1 105048,105049 1y0hA 105 7.14e+01 1eiyB 785 7.19e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16305,16306,25314,39313,40782,41458 1aim 215 7.25e+01 1cs8A d.3.1.1 37044 2cwzA 141 7.33e+01 1o4tA 133 7.48e+01 b.82.1.9 86622 1wlyA 333 7.53e+01 1mwrA 646 7.67e+01 d.17.4.5,d.175.1.1,e.3.1.1 79586,79587,79588 1ecfA 504 7.75e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1p3wA 404 7.75e+01 c.67.1.3 87752 1bbpA 173 7.86e+01 1bbpA b.60.1.1 27147 1a8p 258 7.95e+01 1fdr b.43.4.2,c.25.1.1 25654,31544 1gt91 357 7.96e+01 1z4xA 532 7.98e+01 1sr4A 206 8.03e+01 b.42.2.1 105948 2bwqA 129 8.05e+01 1vmaA 306 8.17e+01 a.24.13.1,c.37.1.10 108887,108888 1wi6A 88 8.21e+01 1mil 104 8.40e+01 1d4tA d.93.1.1 40496 1vixA 420 8.45e+01 c.56.5.4,d.58.19.1 100777,100778 1oa4A 222 8.49e+01 b.29.1.11 86731 1y1pA 342 8.64e+01 1cgt 684 8.65e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21815,22484,27722,28709 1zs7A 190 8.68e+01 1uirA 314 8.75e+01 c.66.1.17 99429 1ofuA 320 8.81e+01 c.32.1.1,d.79.2.1 86972,86973 1z4vA 532 8.88e+01 1l6oA 95 8.92e+01 b.36.1.1 84534 1xfkA 336 8.93e+01