# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dnlA 199 3.39e-19 1ci0A b.45.1.1 25753 1g79A 218 5.34e-19 1ci0A b.45.1.1 25752 1nrgA 261 2.28e-17 b.45.1.1 80694 1ty9A 222 6.63e-16 2fhqA 141 3.85e-15 1rfeA 162 5.05e-15 1vl7A 157 1.32e-12 b.45.1.1 108732 2asfA 137 1.46e-11 2arzA 247 2.14e-11 2fg9A 178 2.68e-11 2aq6A 147 8.63e-11 1w9aA 147 2.84e-10 2furA 209 1.72e-08 1xhnA 184 1.24e-07 1flmA 122 3.58e-07 1axj b.45.1.1 25747 1w3oA 216 5.75e-07 1ejeA 192 1.95e-02 1ejeA b.45.1.2 25757 2bgiA 272 1.33e+00 1uirA 314 1.53e+00 c.66.1.17 99429 1ko3A 230 1.57e+00 d.157.1.1 90974 1pvtA 238 1.61e+00 c.74.1.1 95189 1b7yA 350 1.88e+00 1pysA d.104.1.1 40776 1iwmA 186 2.55e+00 b.125.1.2 83758 1wsrA 375 2.65e+00 1knqA 175 3.44e+00 c.37.1.17 72786 2d37A 176 3.87e+00 1a8d 452 4.02e+00 1a8d b.29.1.6,b.42.4.2 24262,25607 1sbyA 254 4.30e+00 1twfK 120 4.38e+00 1wbiA 129 4.47e+00 1n67A 359 4.83e+00 b.2.3.4,b.2.3.4 85354,85355 1s3rA 535 5.52e+00 1euhA 475 5.62e+00 1euhA c.82.1.1 35369 1kr4A 125 6.06e+00 d.58.5.2 72889 1qd1A 325 6.10e+00 1qd1A d.58.34.1,d.58.34.1 39493,39494 1ukuA 102 6.23e+00 d.58.5.2 99533 1q6hA 224 6.60e+00 d.26.1.1 95975 1iejA 332 6.75e+00 1nnt c.94.1.2 62328 1y08A 323 7.18e+00 2cw5A 255 7.30e+00 1fsgA 233 7.35e+00 1qk3A c.61.1.1 34029 1ww7A 160 7.40e+00 1tzlA 622 7.97e+00 1oa4A 222 8.06e+00 b.29.1.11 86731 1q6uA 245 8.42e+00 d.26.1.1 95998 1i0rA 169 8.45e+00 1i0rA b.45.1.2 61489 1goiA 499 8.52e+00 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1zzkA 82 9.73e+00 1b8aA 438 9.78e+00 1b8aA b.40.4.1,d.104.1.1 25244,40765 1k8kD 300 1.03e+01 d.198.2.1,d.198.2.1 68309,68310 1tt0A 623 1.04e+01 2dg5B 190 1.04e+01 1pg4A 652 1.08e+01 e.23.1.1 88067 1p2hA 571 1.22e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1w8oA 601 1.25e+01 1tr8A 102 1.37e+01 2f5vA 595 1.39e+01 1lrzA 426 1.43e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1v6tA 255 1.45e+01 2bitX 165 1.49e+01 1cjxA 357 1.52e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1jofA 365 1.66e+01 b.69.10.1 71775 1rlmA 271 1.69e+01 1s5jA 847 1.73e+01 1ecfA 504 1.75e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1zvkA 358 1.76e+01 1rkiA 102 1.77e+01 2gp4A 628 1.79e+01 1al3 324 1.81e+01 1al3 c.94.1.1 35835 2bbeA 108 1.95e+01 2bbsA 290 1.96e+01 1wvhA 134 1.96e+01 1ta3A 274 1.96e+01 c.1.8.5 106731 2gdzA 267 1.99e+01 1vpkA 378 2.01e+01 1rocA 155 2.16e+01 b.1.22.1 97673 1vi6A 208 2.16e+01 c.23.15.1 100736 2fp8A 322 2.16e+01 1yndA 165 2.20e+01 1agqA 135 2.21e+01 1agqA g.17.1.2 44789 1tbd 134 2.22e+01 2tbd d.89.1.1 40240 1tqnA 486 2.31e+01 a.104.1.1 107238 1oxxK 353 2.49e+01 b.40.6.3,c.37.1.12 93715,93716 1m40A 263 2.57e+01 e.3.1.1 74437 1ysjA 404 2.68e+01 1hm9A 468 2.68e+01 b.81.1.4,c.68.1.5 65866,65867 1vkkA 154 2.69e+01 d.109.1.2 108669 1bvyF 191 2.70e+01 1bvyF c.23.5.1 31207 1p35A 299 2.70e+01 1p35A b.28.1.1 23925 1rloA 271 2.73e+01 1jjtA 228 2.79e+01 1a7tA d.157.1.1 63139 1qsmA 152 3.01e+01 1qsmA d.108.1.1 40808 1tkeA 224 3.02e+01 1vpjA 192 3.07e+01 1yrbA 262 3.10e+01 2fgtA 417 3.10e+01 1i24A 404 3.20e+01 c.2.1.2 83663 1sqeA 109 3.25e+01 d.58.4.5 105908 1mhnA 59 3.26e+01 b.34.9.1 84964 1widA 130 3.31e+01 1yzsA 121 3.37e+01 1y0yA 353 3.37e+01 1wi6A 88 3.40e+01 2ffyA 358 3.47e+01 1bj7 156 3.56e+01 1bj7 b.60.1.1 27113 1bywA 110 3.62e+01 1bywA d.110.3.6 40912 2gvkA 317 3.63e+01 1clc 639 3.64e+01 1clc a.102.1.2,b.1.18.2 18835,21872 1n9lA 109 3.75e+01 d.110.3.6 85468 2cu5A 129 3.82e+01 1mdbA 539 3.86e+01 e.23.1.1 79008 1p1lA 102 3.89e+01 d.58.5.2 87695 1je5A 206 3.89e+01 1je5A b.40.4.7 62909 1rypF 233 3.94e+01 1rypF d.153.1.4 41937 1e8cA 498 3.96e+01 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1gvp 87 3.99e+01 1gvp b.40.4.7 25369 1dpgA 485 4.00e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 2gnqA 336 4.08e+01 1tdhA 364 4.16e+01 a.156.1.2,b.113.1.1,g.39.1.8 106772,106773,106774 1m6yA 301 4.21e+01 a.60.13.1,c.66.1.23 78716,78717 1vqoE 178 4.25e+01 1o4sA 389 4.38e+01 c.67.1.1 86620 1e5mA 416 4.44e+01 1dd8A c.95.1.1,c.95.1.1 58973,58974 1zk4A 251 4.48e+01 1kv7A 488 4.51e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1o7fA 469 4.54e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2f15A 96 4.54e+01 1j71A 334 4.57e+01 1eagA b.50.1.2 62669 1ox0A 430 4.58e+01 c.95.1.1,c.95.1.1 87495,87496 1gppA 237 4.60e+01 b.86.1.2 76262 1e6wA 260 4.61e+01 1e6wA c.2.1.2 59326 1ub9A 100 4.66e+01 a.4.5.28 99159 2bopA 85 4.66e+01 2bopA d.58.8.1 39217 2a1vA 144 4.76e+01 1vlyA 338 4.81e+01 b.44.2.1,d.250.1.1 108871,108872 1vmjA 151 4.81e+01 4fiv 113 4.85e+01 1fmb b.50.1.1 26762 2bswA 146 4.87e+01 2avtA 378 5.08e+01 1sqgA 429 5.17e+01 a.79.1.3,c.66.1.38 105912,105913 1s2wA 295 5.19e+01 c.1.12.7 98407 1lk2B 99 5.28e+01 b.1.1.2 91058 1c8uA 285 5.31e+01 1c8uA d.38.1.3,d.38.1.3 38547,38548 1kuuA 202 5.33e+01 d.153.2.1 73019 1cruA 454 5.34e+01 1c9uA b.68.2.1 27617 1gpeA 587 5.45e+01 1gpeA c.3.1.2,d.16.1.1 30387,37951 1ftrA 296 5.69e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1ylnA 252 5.72e+01 1zd7A 159 5.84e+01 1tuhA 156 5.86e+01 d.17.4.11 107345 1li4A 432 5.94e+01 c.2.1.4,c.23.12.3 84616,84617 1zkkA 167 5.95e+01 1kbvA 327 5.96e+01 b.6.1.3,b.6.1.3 68395,68396 1at0 145 6.06e+01 1at0 b.86.1.1 28374 2g1uA 155 6.07e+01 1jc4A 148 6.23e+01 1jc4A d.32.1.4 62863 2arpA 116 6.31e+01 1wlgA 299 6.33e+01 1ekrA 161 6.39e+01 1ekrA d.58.21.1 39380 1exqA 154 6.56e+01 1b9dA c.55.3.2 33646 1o5uA 101 6.58e+01 b.82.1.8 92518 1y0hA 105 6.69e+01 1y7wA 291 6.70e+01 1yopA 83 6.70e+01 1g291 372 6.75e+01 1g291 1gtmA 419 6.77e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1hrnA 337 6.87e+01 1smrA b.50.1.2 26869 2b0jA 358 6.88e+01 1vkbA 161 6.93e+01 d.269.1.1 108643 1rz3A 201 6.99e+01 c.37.1.6 98132 1wj9A 211 7.12e+01 2asbA 251 7.22e+01 1ihuA 589 7.23e+01 c.37.1.10,c.37.1.10 62394,62395 1ywxA 102 7.34e+01 1lq9A 112 7.42e+01 d.58.4.3 78129 2gibA 103 7.49e+01 1qfoA 119 7.50e+01 1qfoA b.1.1.1 19708 1xw3A 110 7.57e+01 1hpi 71 7.59e+01 1ckuA g.35.1.1 44995 1cby 259 7.61e+01 1cby d.103.1.1 40705 1wubA 178 7.62e+01 1e4fT 419 7.63e+01 1e4fT c.55.1.1,c.55.1.1 33453,33454 1zx4A 192 7.67e+01 1sqwA 188 7.74e+01 1ikpA 613 7.76e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1v5vA 401 7.76e+01 1o54A 277 7.78e+01 c.66.1.13 92482 1mqoA 227 7.79e+01 d.157.1.1 103846 1xqbA 247 7.81e+01 1h2eA 207 7.85e+01 c.60.1.1 70857 1h2wA 710 7.94e+01 b.69.7.1,c.69.1.4 76596,76597 1y55X 126 7.98e+01 1rz1A 161 8.01e+01 b.45.1.2 98124 1pvmA 184 8.11e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1jmsA 381 8.20e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 2gukA 120 8.20e+01 1t77A 414 8.20e+01 1qcxA 359 8.28e+01 1qcxA b.80.1.2 28028 2fdiA 211 8.34e+01 1efyA 350 8.36e+01 1a26 a.41.1.1,d.166.1.2 17413,42275 1pfsA 78 8.45e+01 1pfsA b.40.4.7 25391 2sak 121 8.52e+01 2sak d.15.5.1 37711 1czfA 362 8.55e+01 1czfA b.80.1.3 28031 1rkqA 282 8.57e+01 c.108.1.10 97621 1z5bA 469 8.58e+01 2bywA 418 8.63e+01 1a2zA 220 8.69e+01 1a2zA c.56.4.1 33794 1inp 400 8.71e+01 1inp e.7.1.1 42972 1xvxA 312 8.72e+01 1wu7A 434 8.74e+01 1z52A 470 8.76e+01 1fmcA 255 8.84e+01 1cydA c.2.1.2 29856 1h1nA 305 8.86e+01 c.1.8.3 70855 1uscA 178 8.98e+01 b.45.1.2 99860