# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1g79A 218 1.83e-18 1ci0A b.45.1.1 25752 1dnlA 199 1.92e-18 1ci0A b.45.1.1 25753 1nrgA 261 8.49e-17 b.45.1.1 80694 1ty9A 222 4.88e-15 2fhqA 141 2.21e-14 1rfeA 162 4.07e-14 1vl7A 157 3.20e-12 b.45.1.1 108732 2fg9A 178 1.42e-11 2asfA 137 7.94e-11 2aq6A 147 1.72e-10 1w9aA 147 2.03e-10 2arzA 247 2.12e-10 2furA 209 2.79e-08 1w3oA 216 1.55e-07 1xhnA 184 8.19e-07 1flmA 122 1.09e-06 1axj b.45.1.1 25747 1ejeA 192 9.53e-03 1ejeA b.45.1.2 25757 1z4vA 532 1.41e+00 1pvtA 238 1.64e+00 c.74.1.1 95189 1ko3A 230 1.96e+00 d.157.1.1 90974 1k8kD 300 2.02e+00 d.198.2.1,d.198.2.1 68309,68310 1s5jA 847 2.69e+00 2bgiA 272 2.69e+00 1twfK 120 3.05e+00 1pg4A 652 3.33e+00 e.23.1.1 88067 1ta3A 274 3.34e+00 c.1.8.5 106731 1fsgA 233 3.91e+00 1qk3A c.61.1.1 34029 1kr4A 125 4.29e+00 d.58.5.2 72889 1b7yA 350 4.29e+00 1pysA d.104.1.1 40776 1iwmA 186 4.40e+00 b.125.1.2 83758 1s2wA 295 4.85e+00 c.1.12.7 98407 1uirA 314 6.15e+00 c.66.1.17 99429 1sbyA 254 6.59e+00 2bi7A 384 7.08e+00 1x88A 359 7.19e+00 1ne9A 335 7.25e+00 d.108.1.4,d.108.1.4 91839,91840 1knqA 175 8.32e+00 c.37.1.17 72786 2gdzA 267 8.64e+00 1o54A 277 8.82e+00 c.66.1.13 92482 1q6uA 245 8.88e+00 d.26.1.1 95998 1y08A 323 8.89e+00 1zvkA 358 9.63e+00 1zzkA 82 9.85e+00 2cw5A 255 1.03e+01 2bbsA 290 1.07e+01 1wsrA 375 1.09e+01 1q6hA 224 1.10e+01 d.26.1.1 95975 1al3 324 1.12e+01 1al3 c.94.1.1 35835 1iejA 332 1.17e+01 1nnt c.94.1.2 62328 1euhA 475 1.25e+01 1euhA c.82.1.1 35369 1i0rA 169 1.32e+01 1i0rA b.45.1.2 61489 1bj7 156 1.38e+01 1bj7 b.60.1.1 27113 1tzlA 622 1.40e+01 1oxxK 353 1.41e+01 b.40.6.3,c.37.1.12 93715,93716 1goiA 499 1.48e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 2df7A 458 1.51e+01 1ww7A 160 1.59e+01 1nrwA 288 1.61e+01 c.108.1.10 86128 1me4A 215 1.62e+01 d.3.1.1 79023 1ukuA 102 1.67e+01 d.58.5.2 99533 1s3rA 535 1.72e+01 1tt0A 623 1.72e+01 2fp8A 322 1.84e+01 1w8oA 601 1.85e+01 1kuuA 202 1.91e+01 d.153.2.1 73019 2f15A 96 1.92e+01 1oa4A 222 2.02e+01 b.29.1.11 86731 1jjtA 228 2.02e+01 1a7tA d.157.1.1 63139 1a8d 452 2.08e+01 1a8d b.29.1.6,b.42.4.2 24262,25607 1widA 130 2.09e+01 1i24A 404 2.15e+01 c.2.1.2 83663 1qd1A 325 2.31e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 1rkiA 102 2.40e+01 2f5vA 595 2.43e+01 2gp4A 628 2.44e+01 1aisA 182 2.44e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1g291 372 2.58e+01 1g291 1wy2A 351 2.64e+01 1vqoE 178 2.84e+01 1vkbA 161 2.89e+01 d.269.1.1 108643 1os8A 223 2.91e+01 b.47.1.1 93481 1rypK 198 2.94e+01 d.153.1.4 41879 2gibA 103 2.97e+01 1wi6A 88 3.02e+01 1p35A 299 3.05e+01 1p35A b.28.1.1 23925 1vmfA 145 3.06e+01 2d37A 176 3.06e+01 1t1gA 364 3.10e+01 c.41.1.2 106246 2dg5B 190 3.11e+01 1vmhA 144 3.12e+01 1vqzA 341 3.15e+01 2bitX 165 3.17e+01 1e6wA 260 3.17e+01 1e6wA c.2.1.2 59326 1vkkA 154 3.22e+01 d.109.1.2 108669 1b25A 619 3.23e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1sqgA 429 3.39e+01 a.79.1.3,c.66.1.38 105912,105913 1zk4A 251 3.41e+01 1n67A 359 3.43e+01 b.2.3.4,b.2.3.4 85354,85355 1rz3A 201 3.50e+01 c.37.1.6 98132 1tbd 134 3.64e+01 2tbd d.89.1.1 40240 1z0nA 96 3.65e+01 1b8aA 438 3.71e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1rlmA 271 3.72e+01 1rypF 233 3.74e+01 1rypF d.153.1.4 41937 1g5tA 196 3.78e+01 1g5rA c.37.1.11 32366 1e8cA 498 3.78e+01 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2c07A 285 3.80e+01 1ywxA 102 3.86e+01 1agqA 135 3.89e+01 1agqA g.17.1.2 44789 1b7yB 785 3.92e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1mhnA 59 3.94e+01 b.34.9.1 84964 2ga9D 469 3.98e+01 1a34A 159 4.01e+01 1a34A b.121.7.1 23286 1tuhA 156 4.09e+01 d.17.4.11 107345 2arpA 116 4.18e+01 2ag5A 246 4.21e+01 1jfuA 186 4.27e+01 c.47.1.10 62940 1ixcA 294 4.29e+01 a.4.5.37,c.94.1.1 83764,83765 1h7zA 194 4.29e+01 1qhvA b.21.1.1 60733 2bbeA 108 4.29e+01 1mdbA 539 4.34e+01 e.23.1.1 79008 1cr5A 189 4.49e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 1iy8A 267 4.56e+01 c.2.1.2 83774 1tr8A 102 4.56e+01 1h2bA 359 4.64e+01 b.35.1.2,c.2.1.1 90543,90544 1o5uA 101 4.66e+01 b.82.1.8 92518 1ox0A 430 4.67e+01 c.95.1.1,c.95.1.1 87495,87496 1uzmA 247 4.67e+01 1m40A 263 4.68e+01 e.3.1.1 74437 2fgtA 417 4.71e+01 1rloA 271 4.72e+01 1rkqA 282 4.84e+01 c.108.1.10 97621 1vmjA 151 4.84e+01 2avtA 378 4.91e+01 1ysjA 404 4.96e+01 1ecfA 504 4.99e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1wvhA 134 5.03e+01 1gvp 87 5.15e+01 1gvp b.40.4.7 25369 1j71A 334 5.19e+01 1eagA b.50.1.2 62669 1e5mA 416 5.24e+01 1dd8A c.95.1.1,c.95.1.1 58973,58974 1je5A 206 5.44e+01 1je5A b.40.4.7 62909 1lrzA 426 5.45e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1gvjA 146 5.51e+01 a.4.5.21 90525 2cwsA 237 5.55e+01 1sr4A 206 5.66e+01 b.42.2.1 105948 2fblA 153 5.74e+01 1f6bA 198 5.74e+01 c.37.1.8 64986 1ub9A 100 5.76e+01 a.4.5.28 99159 1dbqA 289 5.78e+01 1qpzA c.93.1.1 35666 1p2hA 571 5.82e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 2etjA 250 5.88e+01 1qsmA 152 5.92e+01 1qsmA d.108.1.1 40808 1dp4A 435 5.96e+01 1dp4A c.93.1.1 35710 1w6sA 599 5.98e+01 2etvA 346 5.99e+01 2cveA 191 6.00e+01 1vpbA 451 6.00e+01 1wcdJ 441 6.04e+01 1jofA 365 6.08e+01 b.69.10.1 71775 1vpjA 192 6.18e+01 1vi6A 208 6.27e+01 c.23.15.1 100736 1u69A 163 6.38e+01 d.32.1.7 107699 1j5pA 253 6.43e+01 d.81.1.3,c.2.1.3 71577,83092 1sqeA 109 6.46e+01 d.58.4.5 105908 2czrA 226 6.47e+01 1vc1A 110 6.51e+01 c.13.2.1 108493 1eluA 390 6.53e+01 1elqA c.67.1.3 34434 2gukA 120 6.53e+01 1w66A 232 6.55e+01 1wbiA 129 6.60e+01 2a1vA 144 6.62e+01 1c8uA 285 6.63e+01 1c8uA d.38.1.3,d.38.1.3 38547,38548 1kv7A 488 6.63e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1p1lA 102 6.71e+01 d.58.5.2 87695 1mqoA 227 6.72e+01 d.157.1.1 103846 1rypJ 204 6.82e+01 d.153.1.4 41878 1ylnA 252 6.88e+01 1prxA 224 6.88e+01 1prxA c.47.1.10 33076 1sczA 233 6.92e+01 c.43.1.1 98802 1q1rA 431 6.93e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1wgrA 100 6.99e+01 1x3lA 440 7.00e+01 2fe7A 166 7.03e+01 1tc1A 220 7.05e+01 1tc1A c.61.1.1 34083 1txuA 273 7.37e+01 a.222.1.1 107439 1sqwA 188 7.39e+01 1y0hA 105 7.41e+01 2cu5A 129 7.51e+01 1vlyA 338 7.59e+01 b.44.2.1,d.250.1.1 108871,108872 1wubA 178 7.62e+01 2bkrA 212 7.80e+01 1r53A 382 7.84e+01 d.258.1.1 97063 1l0qA 391 7.91e+01 b.1.3.1,b.69.2.3 77644,77645 1qh5A 260 8.02e+01 1qh5A d.157.1.2 42057 2bwrA 401 8.03e+01 1w2iA 91 8.13e+01 d.58.10.1 109127 1fmcA 255 8.13e+01 1cydA c.2.1.2 29856 1zatA 250 8.15e+01 2d13A 227 8.18e+01 1tkeA 224 8.26e+01 1s6lA 212 8.26e+01 1e4fT 419 8.27e+01 1e4fT c.55.1.1,c.55.1.1 33453,33454 2fh1A 344 8.31e+01 1yndA 165 8.35e+01 1zkkA 167 8.36e+01 1ihuA 589 8.48e+01 c.37.1.10,c.37.1.10 62394,62395 1exqA 154 8.61e+01 1b9dA c.55.3.2 33646 1g57A 217 8.62e+01 1g57A d.115.1.2 60253 1dpgA 485 8.63e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 1hgxA 183 8.63e+01 1tc1A c.61.1.1 34027 2cfxA 144 8.63e+01 1r3eA 309 8.70e+01 b.122.1.1,d.265.1.2 96907,96908 1zx4A 192 8.75e+01 1e5dA 402 8.80e+01 1e5dA c.23.5.1,d.157.1.3 31208,42061 2abqA 306 8.87e+01 1r6lA 239 8.99e+01 d.14.1.4,d.101.1.1 97153,97154