# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dnlA 199 3.28e-19 1ci0A b.45.1.1 25753 1g79A 218 3.85e-19 1ci0A b.45.1.1 25752 1nrgA 261 8.94e-18 b.45.1.1 80694 1ty9A 222 1.03e-15 2fhqA 141 3.77e-15 1rfeA 162 4.78e-15 1vl7A 157 8.62e-13 b.45.1.1 108732 2fg9A 178 6.99e-12 2asfA 137 1.37e-11 2arzA 247 2.75e-11 2aq6A 147 4.15e-11 1w9aA 147 1.25e-10 2furA 209 5.38e-09 1xhnA 184 1.16e-07 1w3oA 216 2.18e-07 1flmA 122 4.39e-07 1axj b.45.1.1 25747 1ejeA 192 1.24e-02 1ejeA b.45.1.2 25757 1y08A 323 9.40e-01 1ko3A 230 1.08e+00 d.157.1.1 90974 1uirA 314 1.12e+00 c.66.1.17 99429 1pvtA 238 1.12e+00 c.74.1.1 95189 1b7yA 350 1.46e+00 1pysA d.104.1.1 40776 2bgiA 272 1.61e+00 1k8kD 300 1.65e+00 d.198.2.1,d.198.2.1 68309,68310 1s5jA 847 2.05e+00 1mdbA 539 2.27e+00 e.23.1.1 79008 1kr4A 125 2.84e+00 d.58.5.2 72889 1goiA 499 3.03e+00 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1pg4A 652 3.18e+00 e.23.1.1 88067 1qd1A 325 3.28e+00 1qd1A d.58.34.1,d.58.34.1 39493,39494 1sbyA 254 3.64e+00 1iwmA 186 4.08e+00 b.125.1.2 83758 1tzlA 622 4.12e+00 2d37A 176 4.25e+00 1oa4A 222 4.62e+00 b.29.1.11 86731 1q6uA 245 4.91e+00 d.26.1.1 95998 1z4vA 532 4.91e+00 1ww7A 160 5.33e+00 1iejA 332 5.45e+00 1nnt c.94.1.2 62328 1tt0A 623 5.48e+00 2bbsA 290 5.58e+00 1a8d 452 5.67e+00 1a8d b.29.1.6,b.42.4.2 24262,25607 1rypF 233 5.80e+00 1rypF d.153.1.4 41937 1zzkA 82 5.87e+00 1q6hA 224 6.07e+00 d.26.1.1 95975 1ukuA 102 6.40e+00 d.58.5.2 99533 2f5vA 595 6.53e+00 2cw5A 255 6.88e+00 1ta3A 274 6.98e+00 c.1.8.5 106731 1knqA 175 7.00e+00 c.37.1.17 72786 2gdzA 267 7.15e+00 2gibA 103 7.47e+00 1fsgA 233 7.61e+00 1qk3A c.61.1.1 34029 1wsrA 375 7.94e+00 1i24A 404 8.06e+00 c.2.1.2 83663 1rkiA 102 8.12e+00 1jofA 365 8.53e+00 b.69.10.1 71775 1w8oA 601 8.72e+00 1wubA 178 8.90e+00 1twfK 120 9.46e+00 1m40A 263 9.50e+00 e.3.1.1 74437 1zvkA 358 9.55e+00 1x88A 359 9.62e+00 1euhA 475 9.77e+00 1euhA c.82.1.1 35369 1wvhA 134 1.00e+01 1s3rA 535 1.10e+01 1oxxK 353 1.16e+01 b.40.6.3,c.37.1.12 93715,93716 1widA 130 1.18e+01 1mhnA 59 1.30e+01 b.34.9.1 84964 2bkrA 212 1.32e+01 1al3 324 1.33e+01 1al3 c.94.1.1 35835 2d1sA 548 1.36e+01 1jjtA 228 1.44e+01 1a7tA d.157.1.1 63139 1i0rA 169 1.44e+01 1i0rA b.45.1.2 61489 1tkeA 224 1.47e+01 1p35A 299 1.50e+01 1p35A b.28.1.1 23925 1wi6A 88 1.53e+01 1o4sA 389 1.56e+01 c.67.1.1 86620 1vpjA 192 1.61e+01 1e4fT 419 1.61e+01 1e4fT c.55.1.1,c.55.1.1 33453,33454 2czrA 226 1.61e+01 1vlyA 338 1.62e+01 b.44.2.1,d.250.1.1 108871,108872 1wbiA 129 1.62e+01 1s2wA 295 1.62e+01 c.1.12.7 98407 1gvp 87 1.63e+01 1gvp b.40.4.7 25369 1tbd 134 1.76e+01 2tbd d.89.1.1 40240 1vmfA 145 1.76e+01 1e6wA 260 1.80e+01 1e6wA c.2.1.2 59326 2bitX 165 1.89e+01 2sak 121 1.92e+01 2sak d.15.5.1 37711 2bvfA 459 1.94e+01 1dpgA 485 1.98e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 1rz3A 201 1.99e+01 c.37.1.6 98132 2gp4A 628 2.01e+01 1bywA 110 2.04e+01 1bywA d.110.3.6 40912 2f06A 144 2.05e+01 1ub9A 100 2.13e+01 a.4.5.28 99159 1vkbA 161 2.17e+01 d.269.1.1 108643 1ftrA 296 2.18e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1vmjA 151 2.20e+01 1g291 372 2.22e+01 1g291 1vkkA 154 2.26e+01 d.109.1.2 108669 1oo0A 147 2.29e+01 d.232.1.1 87182 1ihuA 589 2.31e+01 c.37.1.10,c.37.1.10 62394,62395 2bopA 85 2.31e+01 2bopA d.58.8.1 39217 2a1vA 144 2.44e+01 1b8aA 438 2.45e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1tuhA 156 2.48e+01 d.17.4.11 107345 2df7A 458 2.54e+01 1ecfA 504 2.56e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1gt1A 159 2.59e+01 b.60.1.1 90515 1lrzA 426 2.60e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1u69A 163 2.69e+01 d.32.1.7 107699 1kv7A 488 2.71e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1exqA 154 2.74e+01 1b9dA c.55.3.2 33646 1cruA 454 2.87e+01 1c9uA b.68.2.1 27617 1wlgA 299 2.90e+01 1lbvA 252 2.96e+01 e.7.1.1 73813 2ew2A 316 3.03e+01 2fp8A 322 3.04e+01 1me4A 215 3.05e+01 d.3.1.1 79023 1ylnA 252 3.10e+01 1vmaA 306 3.11e+01 a.24.13.1,c.37.1.10 108887,108888 1iooA 196 3.13e+01 d.124.1.1 71250 1nrwA 288 3.14e+01 c.108.1.10 86128 2fe7A 166 3.14e+01 1r6lA 239 3.18e+01 d.14.1.4,d.101.1.1 97153,97154 2arpA 116 3.26e+01 1zatA 250 3.29e+01 1rkqA 282 3.30e+01 c.108.1.10 97621 1sqgA 429 3.30e+01 a.79.1.3,c.66.1.38 105912,105913 1w4sA 174 3.33e+01 1yzsA 121 3.38e+01 2fgtA 417 3.39e+01 1kbvA 327 3.39e+01 b.6.1.3,b.6.1.3 68395,68396 1aisA 182 3.45e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1rlmA 271 3.46e+01 1agqA 135 3.51e+01 1agqA g.17.1.2 44789 1rypK 198 3.52e+01 d.153.1.4 41879 1y0hA 105 3.53e+01 1tqnA 486 3.63e+01 a.104.1.1 107238 1vclA 432 3.75e+01 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1xw3A 110 3.82e+01 1r53A 382 3.84e+01 d.258.1.1 97063 1n67A 359 3.86e+01 b.2.3.4,b.2.3.4 85354,85355 2bi7A 384 3.86e+01 1a8l 226 3.87e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 1sqeA 109 3.89e+01 d.58.4.5 105908 1jc4A 148 3.90e+01 1jc4A d.32.1.4 62863 2c07A 285 3.93e+01 1bj7 156 3.94e+01 1bj7 b.60.1.1 27113 2cwzA 141 3.95e+01 1ywxA 102 3.98e+01 1rloA 271 4.07e+01 1aoeA 192 4.09e+01 1aoeA c.71.1.1 34923 1tr9A 341 4.14e+01 2cfxA 144 4.21e+01 1e5dA 402 4.24e+01 1e5dA c.23.5.1,d.157.1.3 31208,42061 1tr8A 102 4.35e+01 1sqwA 188 4.36e+01 2pii 112 4.46e+01 2pii d.58.5.1 39071 1cjxA 357 4.55e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1qsmA 152 4.57e+01 1qsmA d.108.1.1 40808 2c1lA 358 4.58e+01 2gukA 120 4.60e+01 1cr5A 189 4.60e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 1zk4A 251 4.65e+01 1p1lA 102 4.69e+01 d.58.5.2 87695 1p2hA 571 4.76e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1w2iA 91 4.77e+01 d.58.10.1 109127 1je5A 206 4.79e+01 1je5A b.40.4.7 62909 2asbA 251 4.82e+01 1aba 87 4.82e+01 1aba c.47.1.1 32760 1nulA 152 4.82e+01 1nulA c.61.1.1 34011 1e2wA 251 4.88e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 1hrnA 337 4.89e+01 1smrA b.50.1.2 26869 2ftrA 108 4.91e+01 2a9gA 418 5.01e+01 1u55A 188 5.03e+01 d.278.1.1 107677 2rslA 140 5.07e+01 2rslA c.53.1.1 33345 1t1gA 364 5.08e+01 c.41.1.2 106246 1o54A 277 5.08e+01 c.66.1.13 92482 1l0qA 391 5.20e+01 b.1.3.1,b.69.2.3 77644,77645 1ukgA 252 5.21e+01 b.29.1.1 99489 1y0yA 353 5.22e+01 1e8cA 498 5.26e+01 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1txuA 273 5.28e+01 a.222.1.1 107439 1agjA 242 5.34e+01 1agjA b.47.1.1 25827 1wexA 104 5.42e+01 1p4kA 295 5.43e+01 d.153.1.5 87772 2gnqA 336 5.46e+01 1z5bA 469 5.46e+01 1vqoE 178 5.48e+01 1n9eA 787 5.50e+01 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1vqzA 341 5.51e+01 1at0 145 5.61e+01 1at0 b.86.1.1 28374 2dg5B 190 5.64e+01 1n9lA 109 5.64e+01 d.110.3.6 85468 1gvjA 146 5.67e+01 a.4.5.21 90525 1z0nA 96 5.73e+01 2cviA 83 5.78e+01 1iy8A 267 5.81e+01 c.2.1.2 83774 1ox0A 430 5.90e+01 c.95.1.1,c.95.1.1 87495,87496 1lk2B 99 5.91e+01 b.1.1.2 91058 2ga9D 469 5.91e+01 1c8uA 285 5.92e+01 1c8uA d.38.1.3,d.38.1.3 38547,38548 1vi6A 208 5.93e+01 c.23.15.1 100736 2bwrA 401 5.95e+01 1rypH 205 5.96e+01 d.153.1.4 41876 1v4pA 157 5.97e+01 1vmhA 144 5.97e+01 1whvA 100 6.01e+01 1yt3A 375 6.01e+01 1rocA 155 6.03e+01 b.1.22.1 97673 1pfsA 78 6.03e+01 1pfsA b.40.4.7 25391 1u6tA 121 6.03e+01 2gvkA 317 6.09e+01 1gttA 429 6.14e+01 d.177.1.1,d.177.1.1 70529,70530 1i19A 561 6.15e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1g5tA 196 6.16e+01 1g5rA c.37.1.11 32366 1y7wA 291 6.17e+01 1rz1A 161 6.23e+01 b.45.1.2 98124 1m6yA 301 6.28e+01 a.60.13.1,c.66.1.23 78716,78717 2gjgA 248 6.32e+01 1l3kA 196 6.37e+01 d.58.7.1,d.58.7.1 73539,73540 1vhsA 175 6.44e+01 d.108.1.1 100698 2f15A 96 6.59e+01 1j71A 334 6.59e+01 1eagA b.50.1.2 62669 1yrbA 262 6.60e+01 3pviA 157 6.61e+01 3pviA c.52.1.6 33300 1wj9A 211 6.62e+01 2ci1A 275 6.62e+01 1h6tA 291 6.67e+01 b.1.18.15,c.10.2.1 65686,65687 2bh8A 101 6.68e+01 1ne9A 335 6.70e+01 d.108.1.4,d.108.1.4 91839,91840 1f08A 148 6.78e+01 1f08A d.89.1.2 59564 1v0wA 506 6.79e+01 d.136.1.2,d.136.1.2 108220,108221 2bbeA 108 6.83e+01 1gpeA 587 6.84e+01 1gpeA c.3.1.2,d.16.1.1 30387,37951 1scjB 71 6.88e+01 1scjB d.58.3.2 39069 2g1uA 155 6.92e+01 1jb0D 138 6.93e+01 1jb0D d.187.1.1 62823 1uzmA 247 6.96e+01 1gca 309 7.00e+01 1gca c.93.1.1 35659 1inp 400 7.05e+01 1inp e.7.1.1 42972 1ysjA 404 7.05e+01 1q2lA 939 7.11e+01 1o5uA 101 7.19e+01 b.82.1.8 92518 1t77A 414 7.20e+01 1wv2A 265 7.24e+01 1ufyA 122 7.30e+01 d.79.1.2 88489 1o7fA 469 7.31e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1h0hA 977 7.34e+01 b.52.2.2,c.81.1.1 76435,76436 2d13A 227 7.35e+01 1xnzA 264 7.41e+01 1y1pA 342 7.42e+01 1wznA 252 7.44e+01 1cg2A 393 7.44e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 1r3dA 264 7.49e+01 1kyqA 274 7.52e+01 c.2.1.11,e.37.1.1 73281,73282 1h7zA 194 7.56e+01 1qhvA b.21.1.1 60733 1tdhA 364 7.66e+01 a.156.1.2,b.113.1.1,g.39.1.8 106772,106773,106774 1xqbA 247 7.68e+01 1wvqA 167 7.77e+01 1oe1A 336 7.80e+01 b.6.1.3,b.6.1.3 86891,86892 1e5mA 416 7.80e+01 1dd8A c.95.1.1,c.95.1.1 58973,58974 1nwzA 125 7.82e+01 d.110.3.1 86370 1r45A 204 7.84e+01 1yopA 83 7.86e+01 1epfA 191 7.88e+01 2ncm b.1.1.4,b.1.1.4 21694,21695 1hyvA 166 7.95e+01 1b9dA c.55.3.2 61424 1rypJ 204 8.04e+01 d.153.1.4 41878 2cx1A 187 8.08e+01 1vphA 149 8.08e+01 1oj4A 283 8.12e+01 d.14.1.5,d.58.26.5 93083,93084 1zjcA 418 8.17e+01 1xtzA 264 8.22e+01 2avtA 378 8.22e+01 1jmsA 381 8.23e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1h1nA 305 8.27e+01 c.1.8.3 70855 2bjfA 329 8.31e+01 2f7fA 494 8.33e+01 1hmt 132 8.38e+01 1hmt b.60.1.2 27169 1ri6A 343 8.47e+01 b.69.11.1 97503 1uuyA 167 8.54e+01 c.57.1.1 108059 1z52A 470 8.55e+01 1a2zA 220 8.60e+01 1a2zA c.56.4.1 33794 2b0jA 358 8.62e+01 1kuuA 202 8.62e+01 d.153.2.1 73019 2c4xA 260 8.63e+01 2cu5A 129 8.66e+01 1gqvA 135 8.66e+01 d.5.1.1 70376 1vggA 161 8.71e+01 1sa3A 262 8.79e+01 c.52.1.23 105400 1h09A 338 8.81e+01 b.109.1.1,c.1.8.8 83420,83421 1yndA 165 8.88e+01 1pmi 440 8.89e+01 1pmi b.82.1.3 28114 2ghsA 326 8.92e+01 1s4iA 175 8.95e+01 1zghA 260 8.95e+01 1fmcA 255 8.95e+01 1cydA c.2.1.2 29856 1d2fA 390 8.96e+01 1d2fA c.67.1.3 34411 1h4vB 421 8.99e+01 1adjA c.51.1.1,d.104.1.1 60624,60625