# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dnlA 199 3.36e-23 1ci0A b.45.1.1 25753 1g79A 218 3.80e-23 1ci0A b.45.1.1 25752 1nrgA 261 9.58e-21 b.45.1.1 80694 1ty9A 222 9.01e-17 2fhqA 141 1.33e-16 1rfeA 162 1.66e-16 1vl7A 157 1.88e-14 b.45.1.1 108732 2fg9A 178 3.52e-14 2asfA 137 2.84e-12 2aq6A 147 2.44e-11 1w9aA 147 9.65e-11 2arzA 247 1.08e-09 2furA 209 1.11e-09 1w3oA 216 3.17e-08 1xhnA 184 8.27e-07 1flmA 122 4.57e-06 1axj b.45.1.1 25747 1ejeA 192 7.30e-05 1ejeA b.45.1.2 25757 2etvA 346 1.14e+00 1pvtA 238 1.38e+00 c.74.1.1 95189 1i0rA 169 1.59e+00 1i0rA b.45.1.2 61489 1q6uA 245 2.12e+00 d.26.1.1 95998 2d93A 134 2.53e+00 1ko3A 230 3.03e+00 d.157.1.1 90974 2bwrA 401 3.29e+00 1q6hA 224 3.51e+00 d.26.1.1 95975 1nt2A 210 4.26e+00 c.66.1.3 86149 1qfoA 119 4.76e+00 1qfoA b.1.1.1 19708 1i8dA 213 5.00e+00 b.43.4.3,b.43.4.3 61953,61954 1m40A 263 5.52e+00 e.3.1.1 74437 2gukA 120 6.51e+00 1wisA 124 6.85e+00 1lfpA 249 7.60e+00 e.39.1.1 73885 1b6a 478 9.54e+00 1bn5 a.4.5.25,d.127.1.1 16223,41160 1yrbA 262 9.94e+00 1reqA 727 1.23e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 1tuhA 156 1.23e+01 d.17.4.11 107345 1azsA 220 1.25e+01 1azsA d.58.29.1 39416 1dsxA 87 1.34e+01 1t1dA d.42.1.2 38644 1xb2B 291 1.35e+01 1i8nA 126 1.46e+01 1i8nA g.10.1.2 61976 1wv2A 265 1.50e+01 1v3vA 333 1.55e+01 b.35.1.2,c.2.1.1 108345,108346 1kzlA 208 1.56e+01 b.43.4.3,b.43.4.3 77635,77636 1rz1A 161 1.65e+01 b.45.1.2 98124 1g5tA 196 1.81e+01 1g5rA c.37.1.11 32366 1wlzA 105 1.82e+01 1qyaA 307 1.94e+01 d.21.1.2,d.21.1.2 104653,104654 1q1fA 151 2.05e+01 a.1.1.2 104476 1sdjA 310 2.07e+01 d.21.1.2,d.21.1.2 98807,98808 2frnA 278 2.20e+01 1lrzA 426 2.24e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1ualA 274 2.32e+01 c.116.1.4 88383 1r1mA 164 2.34e+01 d.79.7.1 96820 1gjwA 637 2.36e+01 b.71.1.1,c.1.8.1 60582,60583 1ta3A 274 2.37e+01 c.1.8.5 106731 1kjnA 157 2.38e+01 c.115.1.1 72614 2gdzA 267 2.49e+01 1u69A 163 2.50e+01 d.32.1.7 107699 1rp4A 389 2.51e+01 a.227.1.1 105027 1r6lA 239 2.52e+01 d.14.1.4,d.101.1.1 97153,97154 1m2kA 249 2.54e+01 c.31.1.5 84754 1ojrA 274 2.55e+01 c.74.1.1 93147 1b5l 172 2.64e+01 1b5l a.26.1.3 16900 1txuA 273 2.67e+01 a.222.1.1 107439 1winA 143 2.77e+01 1cruA 454 2.90e+01 1c9uA b.68.2.1 27617 1t1dA 100 2.96e+01 1t1dA d.42.1.2 38637 1w0dA 337 2.98e+01 1lvoA 302 3.14e+01 b.47.1.4 74284 1y8qA 346 3.25e+01 1mkmA 249 3.26e+01 a.4.5.33,d.110.2.2 79242,79243 1ku1A 230 3.37e+01 a.118.3.1 72996 1q5xA 161 3.43e+01 c.8.7.1 95947 1vkkA 154 3.53e+01 d.109.1.2 108669 1kqqA 139 3.54e+01 a.4.3.1 72885 2f62A 161 3.58e+01 1zymA 258 3.59e+01 1zymA a.60.10.1,c.8.1.2 18110,30705 2b4yA 271 3.68e+01 2cwpA 112 3.70e+01 1uscA 178 3.78e+01 b.45.1.2 99860 1s2wA 295 3.78e+01 c.1.12.7 98407 2gtqA 867 3.88e+01 1d3yA 301 3.92e+01 1d3yA e.12.1.1 43252 2ffyA 358 3.94e+01 1zkkA 167 3.95e+01 1xm7A 195 4.17e+01 1am2 199 4.23e+01 1am2 b.86.1.2 28381 1z4rA 168 4.25e+01 1j58A 385 4.28e+01 b.82.1.2 71531 1i24A 404 4.28e+01 c.2.1.2 83663 1jdpA 441 4.28e+01 c.93.1.1 62906 2ag5A 246 4.51e+01 1ye8A 178 4.86e+01 1yoaA 159 5.06e+01 1rc6A 261 5.06e+01 b.82.1.11 97287 1p1mA 406 5.51e+01 b.92.1.4,c.1.9.9 87696,87697 1ve1A 304 5.53e+01 2b2yA 187 5.55e+01 2b61A 377 5.57e+01 1vehA 92 5.63e+01 1ql0A 241 5.63e+01 1qaeA d.4.1.2 37139 1vlpA 441 5.69e+01 d.41.2.2,d.41.2.3 108840,108841 1vk4A 298 5.96e+01 c.72.1.1 100850 1vpbA 451 6.07e+01 2b0jA 358 6.09e+01 1wq3A 322 6.15e+01 1pujA 282 6.48e+01 c.37.1.8 88294 2c4xA 260 6.59e+01 1mjhA 162 6.77e+01 1mjhA c.26.2.4 31639 1sqwA 188 6.78e+01 1khtA 192 6.80e+01 c.37.1.1 84401 1l9vA 317 6.82e+01 d.13.2.1,d.216.1.1 73760,73761 1jx6A 342 6.99e+01 c.93.1.1 67406 1yqyA 523 7.00e+01 1bg1A 722 7.02e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 1vmaA 306 7.04e+01 a.24.13.1,c.37.1.10 108887,108888 1j7xA 302 7.08e+01 c.14.1.2 66425 2dbqA 334 7.16e+01 1agjA 242 7.22e+01 1agjA b.47.1.1 25827 1bn8A 420 7.22e+01 1pcl b.80.1.1 28022 1f1uA 323 7.30e+01 d.32.1.3,d.32.1.3 83200,83201 1uaiA 224 7.32e+01 b.29.1.18 107761 2ptd 298 7.37e+01 2plc c.1.18.2 29605 1qpcA 279 7.40e+01 1fgkA d.144.1.7 41685 1eyqA 222 7.41e+01 1eypA d.36.1.1 38534 1zk4A 251 7.44e+01 1z41A 338 7.46e+01 1wucA 250 7.47e+01 1vyoA 128 7.53e+01 1ytaA 180 7.57e+01 2c4nA 250 7.58e+01 1pzsA 208 7.62e+01 b.1.8.1 104397 1vpqA 273 7.66e+01 2givA 295 7.67e+01 2atpB 115 7.97e+01 1zi8A 236 7.99e+01 1w2fA 276 8.09e+01 d.143.1.3 109125 2bcfA 276 8.13e+01 1v6tA 255 8.14e+01 2agyA 361 8.14e+01 2bo9A 308 8.21e+01 2amlA 373 8.43e+01 2fp1A 166 8.45e+01 1ukgA 252 8.46e+01 b.29.1.1 99489 1wj9A 211 8.51e+01 1w7bA 339 8.56e+01 1t56A 216 8.58e+01 a.4.1.9,a.121.1.1 106428,106429 1it2A 146 8.64e+01 a.1.1.2 66365 2bngA 149 8.66e+01 2bw3A 534 8.71e+01 1kcmA 270 8.71e+01 d.129.3.4 72300 1gvjA 146 8.77e+01 a.4.5.21 90525 2gnoA 305 8.80e+01 1hxrA 115 8.86e+01 1fwqA b.88.1.1 28392 1x89A 178 8.98e+01 1f5mA 180 8.99e+01 1f5mB d.110.2.1 40895