PFRMAT RR
TARGET T0379
AUTHOR SAM-T07
REMARK From group SAM-TO6 under the direction of
REMARK Kevin Karplus.
REMARK Residue-residue contact predictions
REMARK  by George Shackelford and Kevin Karplus
REMARK The value given is an approximation of the probability
REMARK as provided by the neural network.
REMARK The predictions are limited to a score >= .18 which
REMARK is an approximation of the probability.
REMARK
METHOD The predictor is an artificial neural network.
METHOD NN: con.aa7str2_7near3nsep5.47.data03.net
METHOD Inputs may include separation and sequence length,
METHOD e-value statistic based on mutual information values,
METHOD a statistic based on propensity of residues in contact.
METHOD Other inputs are distributions from alignments and
METHOD secondary predictions from SAM-t04 and/or SAM-t06 of
METHOD the University of California, Santa Cruz
MODEL 1
MIRNIVFDLGGVLIHLNREESIRRFKAIGVADIEEMLDPYLQKGLFLDLE
SGRKSEEEFRTELSRYIGKELTYQQVYDALLGFLEEISAEKFDYIDSLRP
DYRLFLLSNTNPYVLDLAMSPRFLPSGRTLDSFFDKVYASCQMGKYKPNE
DIFLEMIADSGMKPEETLFIDDGPANVATAERLGFHTYCPDNGENWIPAI
TRLLREQK
4 13 0 8 0.907646
4 14 0 8 0.898
4 15 0 8 0.901049
4 16 0 8 0.823938
4 21 0 8 0.480356
4 24 0 8 0.642087
4 27 0 8 0.691663
4 28 0 8 0.733237
4 30 0 8 0.478113
4 31 0 8 0.546265
4 33 0 8 0.676248
4 45 0 8 0.451722
4 55 0 8 0.434634
4 73 0 8 0.416455
4 77 0 8 0.424534
4 80 0 8 0.542155
4 81 0 8 0.60921
4 94 0 8 0.489205
4 95 0 8 0.62706
4 97 0 8 0.420862
4 98 0 8 0.808442
4 99 0 8 0.597304
4 101 0 8 0.798086
4 102 0 8 0.945888
4 103 0 8 0.93451
4 104 0 8 0.959764
4 105 0 8 0.91439
4 106 0 8 0.644428
4 118 0 8 0.657418
4 119 0 8 0.678615
4 133 0 8 0.545693
4 134 0 8 0.832384
4 135 0 8 0.728665
4 136 0 8 0.864906
4 137 0 8 0.818717
4 138 0 8 0.620596
4 156 0 8 0.461039
4 157 0 8 0.55505
4 159 0 8 0.479128
4 160 0 8 0.494175
4 162 0 8 0.687333
4 163 0 8 0.629686
4 164 0 8 0.787236
4 165 0 8 0.647173
4 166 0 8 0.828213
4 167 0 8 0.951258
4 168 0 8 0.904388
4 169 0 8 0.604329
4 180 0 8 0.416386
4 183 0 8 0.558743
4 184 0 8 0.598588
4 185 0 8 0.916696
4 186 0 8 0.874959
4 187 0 8 0.887635
4 188 0 8 0.690773
4 189 0 8 0.442768
5 14 0 8 0.915043
5 15 0 8 0.893042
5 16 0 8 0.860193
5 20 0 8 0.49271
5 21 0 8 0.526238
5 24 0 8 0.702761
5 27 0 8 0.744147
5 28 0 8 0.727561
5 31 0 8 0.452186
5 33 0 8 0.64003
5 81 0 8 0.429911
5 94 0 8 0.465513
5 95 0 8 0.620109
5 98 0 8 0.70932
5 102 0 8 0.880876
5 103 0 8 0.846981
5 104 0 8 0.92624
5 105 0 8 0.880563
5 106 0 8 0.733198
5 107 0 8 0.491703
5 118 0 8 0.469914
5 119 0 8 0.52229
5 134 0 8 0.694325
5 136 0 8 0.680419
5 137 0 8 0.7787
5 138 0 8 0.578875
5 156 0 8 0.423137
5 157 0 8 0.453548
5 162 0 8 0.567248
5 164 0 8 0.526401
5 166 0 8 0.54583
5 167 0 8 0.856083
5 168 0 8 0.805959
5 169 0 8 0.664722
5 183 0 8 0.487498
5 185 0 8 0.852267
5 186 0 8 0.613957
5 187 0 8 0.788854
5 188 0 8 0.59899
6 15 0 8 0.976309
6 16 0 8 0.969667
6 17 0 8 0.586376
6 20 0 8 0.751962
6 21 0 8 0.782124
6 23 0 8 0.572058
6 24 0 8 0.826199
6 25 0 8 0.430824
6 27 0 8 0.832523
6 28 0 8 0.774453
6 33 0 8 0.579224
6 40 0 8 0.538752
6 52 0 8 0.472089
6 55 0 8 0.515576
6 59 0 8 0.474623
6 73 0 8 0.451695
6 77 0 8 0.478884
6 91 0 8 0.427067
6 94 0 8 0.554536
6 95 0 8 0.668862
6 98 0 8 0.666303
6 102 0 8 0.575105
6 103 0 8 0.558936
6 104 0 8 0.851562
6 105 0 8 0.950189
6 106 0 8 0.923184
6 107 0 8 0.810832
6 108 0 8 0.652995
6 115 0 8 0.486366
6 118 0 8 0.443921
6 119 0 8 0.50698
6 134 0 8 0.604444
6 136 0 8 0.443787
6 137 0 8 0.889867
6 138 0 8 0.791651
6 153 0 8 0.477792
6 156 0 8 0.603844
6 157 0 8 0.48982
6 162 0 8 0.449355
6 167 0 8 0.777088
6 168 0 8 0.90115
6 169 0 8 0.89593
6 170 0 8 0.684648
6 180 0 8 0.541056
6 185 0 8 0.7252
6 187 0 8 0.805714
6 188 0 8 0.794892
6 189 0 8 0.608976
7 16 0 8 0.994133
7 17 0 8 0.914041
7 18 0 8 0.736582
7 19 0 8 0.698322
7 20 0 8 0.91945
7 21 0 8 0.911741
7 22 0 8 0.596787
7 23 0 8 0.714795
7 24 0 8 0.868709
7 25 0 8 0.501941
7 26 0 8 0.446068
7 27 0 8 0.874095
7 28 0 8 0.720127
7 36 0 8 0.559823
7 37 0 8 0.521055
7 40 0 8 0.647465
7 41 0 8 0.45175
7 52 0 8 0.502333
7 55 0 8 0.544985
7 59 0 8 0.523975
7 73 0 8 0.509553
7 77 0 8 0.474968
7 91 0 8 0.488143
7 94 0 8 0.538285
7 95 0 8 0.489442
7 104 0 8 0.564327
7 105 0 8 0.889856
7 106 0 8 0.902313
7 107 0 8 0.895406
7 108 0 8 0.884158
7 109 0 8 0.775678
7 115 0 8 0.483327
7 137 0 8 0.706012
7 138 0 8 0.679899
7 139 0 8 0.599012
7 140 0 8 0.555244
7 153 0 8 0.457174
7 156 0 8 0.531878
7 167 0 8 0.414902
7 168 0 8 0.712181
7 169 0 8 0.869417
7 170 0 8 0.800723
7 171 0 8 0.601823
7 172 0 8 0.582444
7 187 0 8 0.556213
7 188 0 8 0.626106
7 189 0 8 0.709938
7 190 0 8 0.491205
8 17 0 8 0.943468
8 18 0 8 0.773624
8 19 0 8 0.673827
8 20 0 8 0.878305
8 21 0 8 0.880611
8 23 0 8 0.480705
8 24 0 8 0.714941
8 27 0 8 0.766596
8 28 0 8 0.49127
8 36 0 8 0.630931
8 37 0 8 0.511029
8 40 0 8 0.56484
8 59 0 8 0.453624
8 91 0 8 0.497148
8 105 0 8 0.654257
8 106 0 8 0.874682
8 107 0 8 0.912112
8 108 0 8 0.929885
8 109 0 8 0.893036
8 110 0 8 0.594739
8 111 0 8 0.461607
8 115 0 8 0.455635
8 138 0 8 0.432029
8 139 0 8 0.748731
8 140 0 8 0.77083
8 141 0 8 0.468201
8 168 0 8 0.420528
8 169 0 8 0.736383
8 170 0 8 0.846663
8 171 0 8 0.764951
8 172 0 8 0.71968
8 189 0 8 0.652795
8 190 0 8 0.691422
9 18 0 8 0.832713
9 19 0 8 0.76344
9 20 0 8 0.884662
9 21 0 8 0.867372
9 22 0 8 0.545589
9 23 0 8 0.609915
9 24 0 8 0.757868
9 27 0 8 0.782605
9 28 0 8 0.553197
9 36 0 8 0.628679
9 37 0 8 0.556908
9 40 0 8 0.609815
9 52 0 8 0.424245
9 55 0 8 0.482023
9 59 0 8 0.488229
9 73 0 8 0.435831
9 91 0 8 0.448442
9 94 0 8 0.439853
9 105 0 8 0.44822
9 106 0 8 0.78194
9 107 0 8 0.866466
9 108 0 8 0.923637
9 109 0 8 0.86125
9 110 0 8 0.545582
9 111 0 8 0.415919
9 139 0 8 0.629841
9 140 0 8 0.687076
9 169 0 8 0.648547
9 170 0 8 0.778059
9 171 0 8 0.694166
9 172 0 8 0.631032
9 189 0 8 0.58241
9 190 0 8 0.601451
10 19 0 8 0.772872
10 20 0 8 0.810496
10 21 0 8 0.753949
10 22 0 8 0.513943
10 23 0 8 0.455013
10 24 0 8 0.472726
10 27 0 8 0.490901
10 36 0 8 0.660505
10 37 0 8 0.562862
10 108 0 8 0.746058
10 109 0 8 0.882511
10 110 0 8 0.775055
10 111 0 8 0.560069
10 140 0 8 0.550314
10 141 0 8 0.478435
10 171 0 8 0.644536
10 172 0 8 0.676939
11 20 0 8 0.827417
11 21 0 8 0.771151
11 22 0 8 0.502434
11 23 0 8 0.460505
11 24 0 8 0.472209
11 27 0 8 0.503413
11 35 0 8 0.43458
11 36 0 8 0.66279
11 37 0 8 0.574107
11 40 0 8 0.497468
11 46 0 8 0.435879
11 47 0 8 0.445901
11 48 0 8 0.459204
11 49 0 8 0.439766
11 51 0 8 0.426387
11 108 0 8 0.612576
11 109 0 8 0.810771
11 110 0 8 0.642758
11 111 0 8 0.477645
11 171 0 8 0.500571
11 172 0 8 0.582173
12 21 0 8 0.872686
12 22 0 8 0.55005
12 23 0 8 0.653523
12 24 0 8 0.784734
12 25 0 8 0.491578
12 26 0 8 0.481595
12 27 0 8 0.82512
12 28 0 8 0.661751
12 30 0 8 0.440389
12 33 0 8 0.480877
12 35 0 8 0.42345
12 36 0 8 0.638463
12 37 0 8 0.577686
12 40 0 8 0.644694
12 41 0 8 0.508684
12 45 0 8 0.450437
12 46 0 8 0.442128
12 49 0 8 0.432577
12 51 0 8 0.497121
12 52 0 8 0.556313
12 55 0 8 0.624533
12 59 0 8 0.672716
12 73 0 8 0.584607
12 76 0 8 0.505749
12 77 0 8 0.534204
12 80 0 8 0.533168
12 81 0 8 0.440941
12 87 0 8 0.502717
12 91 0 8 0.629799
12 94 0 8 0.571471
12 95 0 8 0.459696
12 98 0 8 0.520135
12 104 0 8 0.475961
12 105 0 8 0.533412
12 106 0 8 0.417571
12 107 0 8 0.433051
12 108 0 8 0.629799
12 109 0 8 0.647681
12 114 0 8 0.503714
12 115 0 8 0.507396
12 118 0 8 0.521269
12 119 0 8 0.509495
12 130 0 8 0.440004
12 137 0 8 0.576418
12 138 0 8 0.520026
12 149 0 8 0.417753
12 152 0 8 0.510369
12 153 0 8 0.522744
12 156 0 8 0.516238
12 167 0 8 0.447171
12 168 0 8 0.540221
12 169 0 8 0.478653
12 179 0 8 0.425841
12 188 0 8 0.481263
12 189 0 8 0.533051
13 22 0 8 0.600717
13 23 0 8 0.744771
13 24 0 8 0.861147
13 25 0 8 0.544607
13 26 0 8 0.548671
13 27 0 8 0.886195
13 28 0 8 0.760888
13 30 0 8 0.418348
13 31 0 8 0.430928
13 33 0 8 0.520883
13 36 0 8 0.544351
13 37 0 8 0.541967
13 40 0 8 0.664855
13 41 0 8 0.516612
13 51 0 8 0.452722
13 52 0 8 0.561913
13 55 0 8 0.629058
13 59 0 8 0.63603
13 73 0 8 0.555278
13 76 0 8 0.483535
13 77 0 8 0.506262
13 80 0 8 0.524247
13 87 0 8 0.433676
13 91 0 8 0.56473
13 94 0 8 0.576333
13 95 0 8 0.446462
13 98 0 8 0.500041
13 104 0 8 0.502925
13 105 0 8 0.496193
13 106 0 8 0.473206
13 107 0 8 0.45289
13 108 0 8 0.568684
13 115 0 8 0.486146
13 118 0 8 0.450093
13 119 0 8 0.428214
13 137 0 8 0.599381
13 138 0 8 0.5368
13 152 0 8 0.436099
13 153 0 8 0.472754
13 156 0 8 0.474975
13 167 0 8 0.439402
13 168 0 8 0.557957
13 169 0 8 0.558803
13 188 0 8 0.478598
13 189 0 8 0.51892
14 23 0 8 0.677027
14 24 0 8 0.832978
14 25 0 8 0.472441
14 26 0 8 0.450124
14 27 0 8 0.863208
14 28 0 8 0.711934
14 33 0 8 0.448366
14 36 0 8 0.52965
14 37 0 8 0.498367
14 40 0 8 0.591188
14 41 0 8 0.433126
14 52 0 8 0.491553
14 55 0 8 0.542248
14 59 0 8 0.563426
14 73 0 8 0.464453
14 77 0 8 0.425492
14 80 0 8 0.450553
14 91 0 8 0.488344
14 94 0 8 0.465314
14 105 0 8 0.473007
14 106 0 8 0.527333
14 107 0 8 0.509552
14 108 0 8 0.557649
14 115 0 8 0.422407
14 137 0 8 0.53314
14 138 0 8 0.453505
14 168 0 8 0.497376
14 169 0 8 0.529492
14 189 0 8 0.462137
15 24 0 8 0.611273
15 27 0 8 0.664116
15 28 0 8 0.442838
15 36 0 8 0.590622
15 37 0 8 0.469005
15 106 0 8 0.436829
15 107 0 8 0.492704
15 108 0 8 0.631571
15 109 0 8 0.674672
15 171 0 8 0.425339
16 27 0 8 0.702977
16 28 0 8 0.450671
16 36 0 8 0.685389
16 37 0 8 0.582799
16 40 0 8 0.499049
16 55 0 8 0.418708
16 59 0 8 0.453822
16 107 0 8 0.484269
16 108 0 8 0.680247
16 109 0 8 0.6855
16 140 0 8 0.443089
16 171 0 8 0.41756
16 172 0 8 0.422739
17 27 0 8 0.517963
17 35 0 8 0.434506
17 36 0 8 0.654114
17 37 0 8 0.574973
17 40 0 8 0.443974
17 48 0 8 0.424784
17 49 0 8 0.415332
17 51 0 8 0.417505
17 109 0 8 0.499115
17 110 0 8 0.421732
17 111 0 8 0.414973
18 27 0 8 0.468293
18 36 0 8 0.544759
18 37 0 8 0.471329
20 36 0 8 0.432495
20 40 0 8 0.438448
20 55 0 8 0.435177
20 59 0 8 0.475643
20 73 0 8 0.432443
20 76 0 8 0.445279
21 30 0 8 0.452814
21 31 0 8 0.528694
21 33 0 8 0.462476
21 36 0 8 0.490545
21 37 0 8 0.466907
21 40 0 8 0.572638
21 41 0 8 0.444002
21 43 0 8 0.426699
21 51 0 8 0.4349
21 52 0 8 0.46438
21 55 0 8 0.555979
21 59 0 8 0.594189
21 73 0 8 0.511286
21 76 0 8 0.485339
21 77 0 8 0.450114
21 80 0 8 0.458956
21 91 0 8 0.445133
21 94 0 8 0.488066
22 31 0 8 0.428781
23 59 0 8 0.422558
24 33 0 8 0.618865
24 37 0 8 0.441896
24 40 0 8 0.643445
24 41 0 8 0.460701
24 43 0 8 0.460601
24 51 0 8 0.447598
24 52 0 8 0.526473
24 55 0 8 0.632324
24 59 0 8 0.644744
24 63 0 8 0.414553
24 69 0 8 0.449043
24 73 0 8 0.608352
24 76 0 8 0.572546
24 77 0 8 0.574626
24 80 0 8 0.540571
24 81 0 8 0.450693
24 87 0 8 0.468803
24 91 0 8 0.52879
24 94 0 8 0.628033
24 95 0 8 0.51879
24 98 0 8 0.5275
24 118 0 8 0.435791
24 119 0 8 0.438973
24 133 0 8 0.426194
24 156 0 8 0.552798
24 160 0 8 0.512701
24 179 0 8 0.438226
24 183 0 8 0.54235
25 35 0 8 0.423065
25 36 0 8 0.430795
25 40 0 8 0.514682
25 43 0 8 0.431175
25 55 0 8 0.485143
25 59 0 8 0.519883
25 73 0 8 0.432434
25 183 0 8 0.432382
27 40 0 8 0.581353
27 41 0 8 0.421845
27 52 0 8 0.485531
27 55 0 8 0.578667
27 59 0 8 0.596178
27 73 0 8 0.577935
27 76 0 8 0.552723
27 77 0 8 0.564544
27 80 0 8 0.51484
27 81 0 8 0.423468
27 87 0 8 0.427969
27 91 0 8 0.524227
27 94 0 8 0.587055
27 95 0 8 0.516898
27 98 0 8 0.435687
27 115 0 8 0.461768
27 118 0 8 0.427152
27 119 0 8 0.42303
27 137 0 8 0.451469
27 152 0 8 0.43041
27 153 0 8 0.501086
27 156 0 8 0.592364
27 160 0 8 0.421114
27 179 0 8 0.424705
27 180 0 8 0.416531
27 183 0 8 0.433636
28 37 0 8 0.56812
28 40 0 8 0.72876
28 41 0 8 0.546402
28 43 0 8 0.533275
28 44 0 8 0.510319
28 45 0 8 0.518562
28 46 0 8 0.425871
28 49 0 8 0.418767
28 51 0 8 0.51354
28 52 0 8 0.572779
28 55 0 8 0.655161
28 56 0 8 0.441954
28 59 0 8 0.655214
28 63 0 8 0.428188
28 69 0 8 0.465779
28 73 0 8 0.56348
28 76 0 8 0.498039
28 77 0 8 0.504922
28 80 0 8 0.515385
28 81 0 8 0.477206
28 87 0 8 0.450316
28 91 0 8 0.458594
28 94 0 8 0.579662
28 95 0 8 0.469048
28 98 0 8 0.635441
28 104 0 8 0.440523
28 118 0 8 0.437086
28 119 0 8 0.454491
28 160 0 8 0.535651
28 183 0 8 0.587749
28 185 0 8 0.41566
33 43 0 8 0.414277
33 51 0 8 0.458856
33 52 0 8 0.470192
33 55 0 8 0.514852
33 59 0 8 0.541578
33 73 0 8 0.428863
37 49 0 8 0.420148
37 51 0 8 0.480715
37 52 0 8 0.432576
37 55 0 8 0.519331
37 59 0 8 0.553666
37 73 0 8 0.464545
37 76 0 8 0.466629
40 51 0 8 0.430668
40 52 0 8 0.442137
40 55 0 8 0.51944
40 59 0 8 0.534217
40 73 0 8 0.46773
40 76 0 8 0.461274
40 94 0 8 0.449073
41 51 0 8 0.593104
41 52 0 8 0.576651
41 55 0 8 0.632331
41 56 0 8 0.449278
41 59 0 8 0.652606
41 63 0 8 0.43922
41 66 0 8 0.417639
41 69 0 8 0.433311
41 73 0 8 0.514135
41 76 0 8 0.472539
41 80 0 8 0.4527
41 94 0 8 0.45911
43 59 0 8 0.414512
44 55 0 8 0.499157
44 59 0 8 0.540609
44 73 0 8 0.43653
45 55 0 8 0.511086
45 59 0 8 0.555706
45 73 0 8 0.430063
46 55 0 8 0.469811
46 59 0 8 0.51042
47 59 0 8 0.447775
49 58 0 8 0.436302
49 59 0 8 0.627837
49 63 0 8 0.442046
49 66 0 8 0.423849
49 69 0 8 0.416068
49 73 0 8 0.507304
49 76 0 8 0.498413
49 80 0 8 0.432815
49 94 0 8 0.435289
52 62 0 8 0.464717
52 63 0 8 0.581345
52 64 0 8 0.438395
52 66 0 8 0.53867
52 69 0 8 0.554958
52 71 0 8 0.443437
52 72 0 8 0.427593
52 73 0 8 0.668473
52 76 0 8 0.623962
52 77 0 8 0.585097
52 80 0 8 0.574869
52 81 0 8 0.456573
52 87 0 8 0.534259
52 91 0 8 0.575303
52 94 0 8 0.61769
52 95 0 8 0.425048
52 98 0 8 0.48425
55 66 0 8 0.474944
55 69 0 8 0.493243
55 73 0 8 0.628034
55 76 0 8 0.600869
55 77 0 8 0.565106
55 80 0 8 0.544681
55 81 0 8 0.416725
55 87 0 8 0.503657
55 91 0 8 0.551943
55 94 0 8 0.600353
55 95 0 8 0.439054
55 98 0 8 0.417122
55 152 0 8 0.452898
55 156 0 8 0.460147
55 179 0 8 0.436868
56 66 0 8 0.565488
56 67 0 8 0.441984
56 69 0 8 0.576
56 70 0 8 0.432599
56 71 0 8 0.468804
56 72 0 8 0.443906
56 73 0 8 0.640646
56 76 0 8 0.589764
56 77 0 8 0.532264
56 80 0 8 0.552913
56 81 0 8 0.457339
56 84 0 8 0.425241
56 87 0 8 0.515248
56 91 0 8 0.502775
56 94 0 8 0.563801
56 98 0 8 0.503787
56 160 0 8 0.441156
56 183 0 8 0.460603
59 69 0 8 0.578462
59 70 0 8 0.424581
59 71 0 8 0.463152
59 72 0 8 0.450873
59 73 0 8 0.694489
59 74 0 8 0.420668
59 76 0 8 0.656156
59 77 0 8 0.624419
59 80 0 8 0.597481
59 81 0 8 0.466324
59 87 0 8 0.576781
59 91 0 8 0.617044
59 94 0 8 0.636932
59 95 0 8 0.474109
59 98 0 8 0.477688
59 114 0 8 0.421748
59 115 0 8 0.429136
59 118 0 8 0.438971
59 119 0 8 0.414338
59 130 0 8 0.431974
59 152 0 8 0.46038
59 156 0 8 0.465627
59 179 0 8 0.451465
60 69 0 8 0.552791
60 71 0 8 0.446238
60 72 0 8 0.416497
60 73 0 8 0.615581
60 76 0 8 0.567746
60 77 0 8 0.501749
60 80 0 8 0.523513
60 81 0 8 0.420555
60 87 0 8 0.481325
60 91 0 8 0.444984
60 94 0 8 0.511458
60 98 0 8 0.433687
60 183 0 8 0.434626
63 73 0 8 0.584365
63 76 0 8 0.546186
63 77 0 8 0.482454
63 80 0 8 0.486517
63 87 0 8 0.434896
63 91 0 8 0.434749
63 94 0 8 0.486174
64 73 0 8 0.586359
64 76 0 8 0.542384
64 77 0 8 0.470522
64 80 0 8 0.488593
64 87 0 8 0.447711
64 94 0 8 0.46925
66 76 0 8 0.561776
66 77 0 8 0.494386
66 80 0 8 0.496234
66 87 0 8 0.435289
66 91 0 8 0.419836
66 94 0 8 0.49358
67 76 0 8 0.521294
67 77 0 8 0.448203
67 80 0 8 0.464096
67 94 0 8 0.441354
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END