Best Alignments for T0379

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2b0cA/T0379-2b0cA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b0cA/T0379-2b0cA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.2414e-027.87e-18
3cln/T0379-3cln-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3cln/T0379-3cln-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.2408e-011.64e-07 1cll a.39.1.5
2aucA/T0379-2aucA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2aucA/T0379-2aucA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5954e+006.17e-05
2mysB/T0379-2mysB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2mysB/T0379-2mysB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9885e+001.53e-06 1wdcB a.39.1.5
1yruB/T0379-1yruB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yruB/T0379-1yruB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3938e+002.92e-10
1rec/T0379-1rec-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1rec/T0379-1rec-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.6607e+003.74e-06 1rec a.39.1.5
1mvwB/T0379-1mvwB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1mvwB/T0379-1mvwB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.3556e+004.44e-08 i.15.1.1
1a63/T0379-1a63-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1a63/T0379-1a63-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.9050e+006.54e-10 1a62 a.140.3.1
b.40.4.5
1p8cA/T0379-1p8cA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1p8cA/T0379-1p8cA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.3411e+007.28e-02 a.152.1.2
1qckA/T0379-1qckA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qckA/T0379-1qckA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.3857e+003.38e-09 1qckA a.60.5.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001