# TARGET T0379 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0379.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 7 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 H 0.019 0.008 0.010 0.023 0.297 0.643 2 L 0.045 0.037 0.018 0.069 0.234 0.597 3 N 0.036 0.014 0.013 0.100 0.204 0.633 4 R 0.002 0.001 0.044 0.901 0.037 0.016 5 E 0.002 0.001 0.025 0.927 0.037 0.009 6 E 0.001 0.001 0.024 0.950 0.020 0.005 7 S 0.002 0.001 0.007 0.973 0.009 0.009 8 I 0.001 0.001 0.006 0.982 0.008 0.003 9 R 0.001 0.001 0.007 0.976 0.012 0.005 10 R 0.001 0.001 0.007 0.975 0.011 0.005 11 F 0.002 0.001 0.019 0.952 0.019 0.006 12 K 0.002 0.001 0.051 0.911 0.026 0.009 13 A 0.002 0.001 0.077 0.868 0.038 0.013 14 I 0.005 0.001 0.043 0.843 0.057 0.052 15 G 0.009 0.002 0.006 0.047 0.139 0.797 16 V 0.047 0.012 0.010 0.030 0.244 0.658 17 A 0.069 0.020 0.023 0.058 0.387 0.444 18 D 0.058 0.017 0.026 0.051 0.498 0.349 19 I 0.009 0.002 0.429 0.227 0.274 0.060 20 E 0.005 0.002 0.523 0.173 0.255 0.042 21 E 0.003 0.001 0.547 0.238 0.191 0.019 22 M 0.007 0.016 0.155 0.406 0.278 0.138 23 L 0.006 0.014 0.032 0.453 0.211 0.283 24 D 0.004 0.003 0.004 0.076 0.143 0.771 25 P 0.002 0.001 0.021 0.850 0.061 0.066 26 Y 0.003 0.001 0.022 0.886 0.067 0.021 27 L 0.004 0.002 0.021 0.912 0.045 0.017 28 Q 0.003 0.002 0.010 0.953 0.021 0.011 29 K 0.001 0.001 0.003 0.982 0.008 0.005 30 G 0.001 0.001 0.004 0.979 0.009 0.007 31 L 0.001 0.001 0.003 0.981 0.007 0.008 32 F 0.002 0.001 0.006 0.979 0.007 0.006 33 L 0.004 0.001 0.008 0.963 0.013 0.011 34 D 0.005 0.001 0.011 0.929 0.024 0.029 35 L 0.018 0.004 0.015 0.871 0.046 0.046 36 E 0.022 0.006 0.018 0.811 0.091 0.051 37 S 0.018 0.003 0.020 0.611 0.169 0.178 38 G 0.019 0.003 0.013 0.130 0.306 0.529 39 R 0.054 0.019 0.008 0.050 0.246 0.623 40 K 0.065 0.089 0.005 0.046 0.139 0.656 41 S 0.017 0.012 0.003 0.035 0.095 0.839 42 E 0.001 0.001 0.025 0.936 0.024 0.016 43 E 0.001 0.001 0.019 0.953 0.023 0.004 44 E 0.001 0.001 0.022 0.956 0.020 0.002 45 F 0.001 0.001 0.008 0.972 0.013 0.006 46 R 0.001 0.001 0.003 0.982 0.009 0.005 47 T 0.001 0.001 0.004 0.979 0.011 0.005 48 E 0.001 0.001 0.005 0.982 0.008 0.005 49 L 0.001 0.001 0.008 0.968 0.015 0.007 50 S 0.001 0.001 0.020 0.937 0.029 0.013 51 R 0.001 0.001 0.024 0.868 0.074 0.033 52 Y 0.004 0.001 0.023 0.803 0.095 0.074 53 I 0.012 0.009 0.020 0.674 0.110 0.175 54 G 0.021 0.011 0.031 0.242 0.242 0.453 55 K 0.026 0.004 0.086 0.358 0.244 0.282 56 E 0.039 0.020 0.058 0.227 0.218 0.438 57 L 0.020 0.026 0.018 0.217 0.159 0.560 58 T 0.006 0.006 0.003 0.116 0.059 0.811 59 Y 0.001 0.001 0.004 0.981 0.005 0.010 60 Q 0.001 0.001 0.003 0.988 0.006 0.003 61 Q 0.001 0.001 0.005 0.987 0.005 0.002 62 V 0.001 0.001 0.003 0.990 0.003 0.003 63 Y 0.001 0.001 0.003 0.990 0.004 0.003 64 D 0.001 0.001 0.004 0.986 0.006 0.004 65 A 0.001 0.001 0.003 0.989 0.006 0.003 66 L 0.001 0.001 0.004 0.980 0.009 0.006 67 L 0.001 0.001 0.012 0.961 0.018 0.009 68 G 0.001 0.001 0.019 0.923 0.034 0.023 69 F 0.002 0.003 0.030 0.856 0.051 0.058 70 L 0.004 0.019 0.031 0.569 0.101 0.277 71 E 0.004 0.006 0.016 0.371 0.078 0.524 72 E 0.001 0.001 0.001 0.006 0.011 0.982