# TARGET T0379 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str2-from-empty.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0379.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 7 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 H 0.001 0.015 0.873 0.001 0.016 0.016 0.001 0.001 0.005 0.037 0.024 0.003 0.011 2 L 0.001 0.077 0.621 0.001 0.020 0.074 0.001 0.001 0.007 0.125 0.058 0.007 0.009 3 N 0.001 0.022 0.617 0.001 0.007 0.098 0.001 0.001 0.003 0.217 0.025 0.001 0.010 4 R 0.001 0.001 0.027 0.001 0.010 0.913 0.001 0.001 0.001 0.022 0.026 0.001 0.001 5 E 0.001 0.001 0.001 0.001 0.005 0.983 0.001 0.001 0.001 0.002 0.009 0.001 0.001 6 E 0.001 0.001 0.002 0.001 0.006 0.985 0.001 0.001 0.001 0.002 0.005 0.001 0.001 7 S 0.001 0.001 0.002 0.001 0.002 0.991 0.001 0.001 0.001 0.001 0.003 0.001 0.001 8 I 0.001 0.001 0.002 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.003 0.001 0.001 9 R 0.001 0.001 0.001 0.001 0.002 0.989 0.001 0.001 0.001 0.001 0.006 0.001 0.001 10 R 0.001 0.001 0.001 0.001 0.003 0.978 0.001 0.001 0.001 0.002 0.015 0.001 0.001 11 F 0.001 0.001 0.004 0.001 0.004 0.966 0.001 0.001 0.001 0.006 0.017 0.001 0.001 12 K 0.001 0.001 0.006 0.001 0.011 0.964 0.001 0.001 0.001 0.003 0.013 0.001 0.001 13 A 0.001 0.001 0.007 0.001 0.037 0.883 0.001 0.001 0.001 0.006 0.064 0.001 0.001 14 I 0.001 0.001 0.015 0.001 0.054 0.548 0.001 0.001 0.001 0.029 0.351 0.001 0.001 15 G 0.001 0.004 0.091 0.001 0.019 0.097 0.001 0.001 0.007 0.067 0.709 0.001 0.003 16 V 0.001 0.021 0.670 0.001 0.009 0.029 0.001 0.001 0.012 0.175 0.066 0.003 0.014 17 A 0.001 0.033 0.437 0.001 0.004 0.019 0.001 0.001 0.020 0.420 0.020 0.039 0.007 18 D 0.001 0.031 0.702 0.001 0.011 0.044 0.001 0.001 0.012 0.147 0.013 0.001 0.038 19 I 0.001 0.001 0.034 0.001 0.155 0.641 0.001 0.001 0.001 0.019 0.148 0.001 0.001 20 E 0.001 0.001 0.028 0.001 0.301 0.470 0.001 0.001 0.001 0.011 0.188 0.001 0.001 21 E 0.001 0.003 0.053 0.001 0.277 0.576 0.001 0.001 0.002 0.027 0.060 0.001 0.002 22 M 0.001 0.016 0.117 0.001 0.097 0.535 0.001 0.001 0.005 0.058 0.164 0.001 0.005 23 L 0.001 0.064 0.153 0.001 0.028 0.335 0.001 0.001 0.003 0.161 0.243 0.006 0.004 24 D 0.001 0.014 0.562 0.001 0.023 0.158 0.001 0.001 0.001 0.172 0.060 0.001 0.008 25 P 0.001 0.001 0.041 0.001 0.167 0.596 0.001 0.001 0.001 0.038 0.155 0.001 0.001 26 Y 0.001 0.001 0.014 0.001 0.228 0.579 0.001 0.001 0.001 0.018 0.159 0.001 0.001 27 L 0.001 0.003 0.027 0.001 0.172 0.704 0.001 0.001 0.001 0.026 0.063 0.001 0.003 28 Q 0.001 0.007 0.068 0.001 0.037 0.807 0.001 0.001 0.004 0.024 0.046 0.001 0.004 29 K 0.001 0.005 0.054 0.001 0.018 0.768 0.001 0.001 0.003 0.039 0.102 0.003 0.004 30 G 0.001 0.008 0.093 0.001 0.026 0.618 0.001 0.001 0.003 0.056 0.185 0.004 0.006 31 L 0.003 0.011 0.129 0.001 0.040 0.627 0.001 0.001 0.003 0.074 0.096 0.004 0.013 32 F 0.003 0.011 0.145 0.001 0.044 0.674 0.001 0.001 0.004 0.043 0.057 0.008 0.011 33 L 0.002 0.003 0.091 0.001 0.078 0.734 0.001 0.001 0.003 0.031 0.045 0.003 0.008 34 D 0.002 0.002 0.034 0.001 0.050 0.790 0.001 0.001 0.001 0.028 0.084 0.003 0.005 35 L 0.001 0.003 0.036 0.001 0.048 0.693 0.001 0.001 0.001 0.037 0.172 0.002 0.005 36 E 0.003 0.009 0.102 0.001 0.041 0.596 0.001 0.001 0.003 0.060 0.168 0.007 0.010 37 S 0.002 0.008 0.140 0.003 0.039 0.324 0.001 0.001 0.003 0.100 0.362 0.004 0.014 38 G 0.001 0.007 0.295 0.002 0.027 0.073 0.001 0.001 0.005 0.254 0.321 0.007 0.009 39 R 0.001 0.026 0.666 0.001 0.017 0.035 0.001 0.001 0.008 0.136 0.065 0.009 0.035 40 K 0.001 0.088 0.706 0.001 0.004 0.023 0.001 0.001 0.012 0.118 0.011 0.019 0.019 41 S 0.001 0.020 0.846 0.001 0.001 0.030 0.001 0.001 0.005 0.078 0.002 0.001 0.016 42 E 0.001 0.001 0.008 0.001 0.013 0.954 0.001 0.001 0.001 0.007 0.018 0.001 0.001 43 E 0.001 0.001 0.002 0.001 0.022 0.957 0.001 0.001 0.001 0.003 0.017 0.001 0.001 44 E 0.001 0.001 0.003 0.001 0.020 0.967 0.001 0.001 0.001 0.002 0.008 0.001 0.001 45 F 0.001 0.001 0.007 0.001 0.004 0.981 0.001 0.001 0.001 0.002 0.006 0.001 0.001 46 R 0.001 0.001 0.004 0.001 0.002 0.984 0.001 0.001 0.001 0.002 0.007 0.001 0.001 47 T 0.001 0.001 0.002 0.001 0.001 0.982 0.001 0.001 0.001 0.002 0.012 0.001 0.001 48 E 0.001 0.001 0.003 0.001 0.002 0.978 0.001 0.001 0.001 0.002 0.014 0.001 0.001 49 L 0.001 0.001 0.007 0.001 0.005 0.974 0.001 0.001 0.001 0.003 0.011 0.001 0.001 50 S 0.001 0.001 0.005 0.001 0.007 0.973 0.001 0.001 0.001 0.002 0.013 0.001 0.001 51 R 0.001 0.001 0.004 0.001 0.011 0.937 0.001 0.001 0.001 0.005 0.042 0.001 0.001 52 Y 0.001 0.001 0.008 0.001 0.006 0.908 0.001 0.001 0.001 0.006 0.070 0.001 0.001 53 I 0.001 0.001 0.033 0.001 0.014 0.765 0.001 0.001 0.001 0.019 0.165 0.001 0.001 54 G 0.001 0.002 0.172 0.001 0.057 0.416 0.001 0.001 0.003 0.054 0.292 0.001 0.001 55 K 0.001 0.005 0.146 0.001 0.092 0.372 0.001 0.001 0.004 0.212 0.161 0.003 0.004 56 E 0.001 0.018 0.278 0.001 0.054 0.319 0.001 0.001 0.016 0.106 0.191 0.004 0.014 57 L 0.001 0.033 0.491 0.001 0.010 0.214 0.001 0.001 0.017 0.170 0.041 0.012 0.011 58 T 0.001 0.019 0.640 0.001 0.003 0.193 0.001 0.001 0.015 0.098 0.014 0.001 0.015 59 Y 0.001 0.001 0.013 0.001 0.015 0.943 0.001 0.001 0.001 0.013 0.015 0.001 0.001 60 Q 0.001 0.001 0.005 0.001 0.013 0.968 0.001 0.001 0.001 0.003 0.011 0.001 0.001 61 Q 0.001 0.001 0.003 0.001 0.008 0.973 0.001 0.001 0.001 0.001 0.013 0.001 0.001 62 V 0.001 0.001 0.004 0.001 0.001 0.987 0.001 0.001 0.001 0.001 0.004 0.001 0.001 63 Y 0.001 0.001 0.004 0.001 0.001 0.990 0.001 0.001 0.001 0.002 0.002 0.001 0.001 64 D 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.005 0.001 0.001 65 A 0.001 0.001 0.002 0.001 0.001 0.988 0.001 0.001 0.001 0.002 0.006 0.001 0.001 66 L 0.001 0.001 0.003 0.001 0.004 0.972 0.001 0.001 0.001 0.002 0.016 0.001 0.001 67 L 0.001 0.001 0.007 0.001 0.013 0.927 0.001 0.001 0.001 0.005 0.046 0.001 0.001 68 G 0.001 0.001 0.012 0.001 0.024 0.852 0.001 0.001 0.001 0.011 0.098 0.001 0.001 69 F 0.001 0.006 0.038 0.001 0.022 0.736 0.001 0.001 0.001 0.038 0.154 0.001 0.004 70 L 0.001 0.025 0.145 0.001 0.015 0.401 0.002 0.001 0.004 0.069 0.325 0.005 0.008 71 E 0.001 0.008 0.592 0.001 0.007 0.140 0.001 0.001 0.003 0.042 0.198 0.002 0.007 72 E 0.001 0.001 0.955 0.001 0.001 0.014 0.001 0.001 0.001 0.019 0.008 0.001 0.002