# TARGET T0379 # Using neural net dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-n_notor2-from-empty.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 n_notor2 ) # The input amino acid frequencies were determined from # alignment T0379.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 6.62079 # Pos AA G H I P A B S F J M N 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 H 0.132 0.023 0.006 0.030 0.017 0.029 0.078 0.009 0.001 0.006 0.671 2 L 0.166 0.022 0.045 0.065 0.025 0.045 0.093 0.004 0.001 0.013 0.522 3 N 0.042 0.008 0.004 0.025 0.020 0.024 0.453 0.002 0.001 0.004 0.418 4 R 0.012 0.003 0.004 0.007 0.001 0.002 0.031 0.001 0.001 0.002 0.938 5 E 0.007 0.017 0.001 0.010 0.003 0.007 0.344 0.001 0.001 0.006 0.604 6 E 0.033 0.014 0.001 0.003 0.002 0.005 0.779 0.001 0.001 0.035 0.127 7 S 0.091 0.694 0.002 0.008 0.003 0.006 0.060 0.002 0.001 0.002 0.131 8 I 0.017 0.936 0.001 0.003 0.003 0.004 0.005 0.002 0.001 0.001 0.030 9 R 0.013 0.937 0.001 0.001 0.001 0.002 0.005 0.001 0.001 0.001 0.040 10 R 0.026 0.904 0.001 0.001 0.001 0.001 0.002 0.008 0.001 0.001 0.057 11 F 0.029 0.953 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.008 12 K 0.016 0.948 0.003 0.001 0.001 0.004 0.002 0.008 0.001 0.001 0.017 13 A 0.036 0.889 0.003 0.001 0.001 0.003 0.002 0.026 0.001 0.001 0.038 14 I 0.145 0.696 0.002 0.003 0.002 0.001 0.001 0.100 0.001 0.001 0.050 15 G 0.427 0.343 0.033 0.003 0.002 0.002 0.014 0.055 0.001 0.001 0.121 16 V 0.019 0.036 0.588 0.006 0.001 0.002 0.012 0.003 0.001 0.001 0.334 17 A 0.006 0.019 0.005 0.054 0.006 0.015 0.097 0.002 0.001 0.001 0.796 18 D 0.143 0.019 0.002 0.009 0.002 0.002 0.155 0.001 0.001 0.004 0.663 19 I 0.052 0.183 0.004 0.010 0.001 0.002 0.047 0.001 0.001 0.001 0.699 20 E 0.022 0.269 0.001 0.030 0.013 0.021 0.237 0.002 0.001 0.009 0.396 21 E 0.250 0.282 0.001 0.004 0.002 0.010 0.252 0.008 0.001 0.018 0.172 22 M 0.324 0.591 0.002 0.003 0.001 0.001 0.003 0.033 0.001 0.001 0.042 23 L 0.289 0.635 0.018 0.002 0.001 0.001 0.003 0.021 0.001 0.002 0.029 24 D 0.124 0.288 0.078 0.004 0.004 0.005 0.078 0.038 0.001 0.003 0.379 25 P 0.002 0.008 0.009 0.002 0.001 0.001 0.003 0.001 0.001 0.001 0.973 26 Y 0.011 0.012 0.001 0.004 0.001 0.002 0.607 0.003 0.001 0.007 0.351 27 L 0.314 0.054 0.004 0.007 0.003 0.007 0.458 0.008 0.001 0.056 0.090 28 Q 0.064 0.849 0.003 0.014 0.002 0.004 0.014 0.004 0.001 0.001 0.045 29 K 0.024 0.864 0.001 0.006 0.001 0.002 0.007 0.002 0.001 0.001 0.092 30 G 0.055 0.758 0.001 0.004 0.003 0.002 0.008 0.010 0.001 0.001 0.160 31 L 0.040 0.898 0.007 0.002 0.001 0.002 0.005 0.006 0.001 0.001 0.036 32 F 0.010 0.927 0.003 0.006 0.005 0.011 0.007 0.008 0.001 0.001 0.022 33 L 0.026 0.887 0.002 0.004 0.004 0.008 0.005 0.006 0.001 0.001 0.059 34 D 0.054 0.858 0.002 0.001 0.002 0.003 0.004 0.006 0.001 0.001 0.071 35 L 0.038 0.891 0.003 0.004 0.005 0.005 0.002 0.013 0.001 0.001 0.038 36 E 0.049 0.818 0.015 0.003 0.004 0.011 0.014 0.011 0.001 0.003 0.073 37 S 0.063 0.620 0.012 0.009 0.017 0.033 0.033 0.070 0.001 0.001 0.142 38 G 0.484 0.229 0.008 0.008 0.005 0.004 0.011 0.116 0.001 0.002 0.133 39 R 0.382 0.100 0.324 0.006 0.001 0.002 0.031 0.017 0.001 0.006 0.131 40 K 0.045 0.037 0.292 0.073 0.023 0.029 0.094 0.021 0.001 0.004 0.383 41 S 0.084 0.011 0.007 0.036 0.009 0.012 0.330 0.005 0.001 0.003 0.502 42 E 0.001 0.001 0.001 0.002 0.001 0.001 0.005 0.001 0.001 0.001 0.991 43 E 0.001 0.002 0.001 0.002 0.001 0.001 0.697 0.001 0.001 0.004 0.293 44 E 0.024 0.003 0.001 0.001 0.001 0.002 0.914 0.001 0.001 0.028 0.027 45 F 0.150 0.791 0.001 0.007 0.001 0.001 0.009 0.002 0.001 0.001 0.037 46 R 0.021 0.958 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.016 47 T 0.026 0.860 0.001 0.001 0.001 0.001 0.002 0.007 0.001 0.001 0.104 48 E 0.054 0.875 0.001 0.001 0.001 0.001 0.001 0.014 0.001 0.001 0.054 49 L 0.019 0.943 0.006 0.001 0.001 0.001 0.006 0.010 0.001 0.001 0.014 50 S 0.013 0.918 0.003 0.001 0.001 0.002 0.010 0.010 0.001 0.001 0.041 51 R 0.036 0.901 0.002 0.001 0.001 0.001 0.005 0.015 0.001 0.001 0.039 52 Y 0.072 0.881 0.005 0.001 0.001 0.001 0.002 0.009 0.001 0.001 0.029 53 I 0.051 0.859 0.012 0.002 0.003 0.003 0.006 0.027 0.001 0.001 0.036 54 G 0.071 0.632 0.034 0.009 0.007 0.012 0.009 0.071 0.001 0.002 0.153 55 K 0.150 0.475 0.036 0.009 0.006 0.009 0.019 0.031 0.001 0.002 0.261 56 E 0.220 0.320 0.023 0.018 0.007 0.010 0.052 0.058 0.001 0.004 0.289 57 L 0.202 0.242 0.078 0.068 0.022 0.025 0.053 0.028 0.001 0.007 0.275 58 T 0.088 0.185 0.021 0.045 0.019 0.028 0.270 0.010 0.001 0.006 0.328 59 Y 0.025 0.085 0.007 0.015 0.003 0.006 0.064 0.002 0.001 0.002 0.790 60 Q 0.019 0.135 0.003 0.011 0.003 0.005 0.201 0.001 0.001 0.004 0.617 61 Q 0.043 0.137 0.002 0.004 0.004 0.009 0.610 0.004 0.001 0.016 0.171 62 V 0.073 0.799 0.004 0.006 0.004 0.006 0.025 0.004 0.001 0.002 0.077 63 Y 0.016 0.915 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.001 0.060 64 D 0.016 0.845 0.001 0.001 0.001 0.001 0.003 0.005 0.001 0.001 0.129 65 A 0.042 0.910 0.002 0.001 0.001 0.001 0.002 0.005 0.001 0.001 0.038 66 L 0.008 0.963 0.003 0.001 0.001 0.002 0.004 0.010 0.001 0.001 0.010 67 L 0.012 0.952 0.002 0.001 0.001 0.001 0.002 0.009 0.001 0.001 0.020 68 G 0.026 0.929 0.002 0.001 0.001 0.001 0.002 0.013 0.001 0.001 0.025 69 F 0.067 0.868 0.011 0.001 0.001 0.002 0.004 0.017 0.001 0.001 0.029 70 L 0.040 0.820 0.046 0.006 0.005 0.007 0.007 0.018 0.001 0.001 0.051 71 E 0.036 0.682 0.011 0.017 0.012 0.017 0.011 0.037 0.001 0.001 0.177 72 E 0.163 0.418 0.018 0.006 0.005 0.009 0.021 0.022 0.001 0.002 0.334