# TARGET T0379 # Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0379.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 7 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 H 0.011 0.016 0.084 0.019 0.132 0.099 0.640 2 L 0.017 0.036 0.057 0.053 0.197 0.146 0.494 3 N 0.006 0.012 0.025 0.058 0.161 0.098 0.640 4 R 0.003 0.002 0.044 0.689 0.097 0.059 0.107 5 E 0.001 0.001 0.014 0.926 0.012 0.028 0.019 6 E 0.001 0.001 0.013 0.954 0.006 0.015 0.010 7 S 0.001 0.001 0.006 0.976 0.002 0.010 0.005 8 I 0.001 0.001 0.002 0.990 0.002 0.004 0.002 9 R 0.001 0.001 0.002 0.990 0.001 0.005 0.001 10 R 0.001 0.001 0.001 0.985 0.001 0.011 0.001 11 F 0.001 0.001 0.003 0.985 0.002 0.008 0.002 12 K 0.001 0.001 0.017 0.968 0.001 0.012 0.002 13 A 0.001 0.001 0.011 0.953 0.002 0.033 0.001 14 I 0.001 0.001 0.019 0.788 0.012 0.176 0.004 15 G 0.002 0.005 0.014 0.147 0.051 0.740 0.040 16 V 0.015 0.014 0.014 0.033 0.167 0.150 0.607 17 A 0.048 0.027 0.019 0.040 0.378 0.046 0.442 18 D 0.047 0.021 0.016 0.048 0.141 0.030 0.698 19 I 0.002 0.002 0.296 0.567 0.028 0.061 0.044 20 E 0.002 0.001 0.413 0.478 0.016 0.074 0.016 21 E 0.002 0.001 0.456 0.392 0.015 0.112 0.021 22 M 0.004 0.008 0.191 0.514 0.029 0.202 0.053 23 L 0.012 0.027 0.035 0.269 0.244 0.183 0.231 24 D 0.011 0.007 0.019 0.176 0.116 0.116 0.555 25 P 0.001 0.001 0.046 0.849 0.031 0.050 0.023 26 Y 0.001 0.001 0.058 0.874 0.014 0.038 0.013 27 L 0.002 0.002 0.040 0.887 0.013 0.039 0.019 28 Q 0.003 0.001 0.010 0.940 0.007 0.020 0.019 29 K 0.005 0.001 0.007 0.933 0.009 0.032 0.013 30 G 0.005 0.001 0.009 0.919 0.009 0.040 0.017 31 L 0.005 0.002 0.010 0.914 0.016 0.024 0.028 32 F 0.007 0.002 0.011 0.922 0.013 0.023 0.021 33 L 0.006 0.001 0.011 0.918 0.011 0.036 0.017 34 D 0.004 0.001 0.016 0.880 0.021 0.052 0.025 35 L 0.004 0.003 0.024 0.844 0.028 0.064 0.033 36 E 0.003 0.003 0.026 0.774 0.021 0.126 0.048 37 S 0.003 0.001 0.022 0.296 0.050 0.603 0.025 38 G 0.010 0.001 0.013 0.087 0.242 0.530 0.116 39 R 0.030 0.021 0.006 0.018 0.258 0.040 0.628 40 K 0.096 0.302 0.004 0.019 0.115 0.008 0.458 41 S 0.028 0.009 0.001 0.015 0.047 0.005 0.895 42 E 0.001 0.001 0.042 0.915 0.006 0.028 0.008 43 E 0.001 0.001 0.017 0.970 0.002 0.010 0.001 44 E 0.001 0.001 0.038 0.950 0.001 0.010 0.001 45 F 0.001 0.001 0.013 0.977 0.001 0.006 0.002 46 R 0.001 0.001 0.008 0.979 0.001 0.009 0.002 47 T 0.001 0.001 0.007 0.970 0.002 0.019 0.001 48 E 0.001 0.001 0.005 0.957 0.002 0.034 0.002 49 L 0.001 0.002 0.006 0.957 0.005 0.024 0.007 50 S 0.001 0.001 0.023 0.936 0.005 0.031 0.005 51 R 0.001 0.001 0.026 0.919 0.008 0.042 0.005 52 Y 0.001 0.001 0.037 0.889 0.007 0.059 0.006 53 I 0.003 0.004 0.020 0.755 0.027 0.163 0.027 54 G 0.011 0.003 0.039 0.365 0.067 0.379 0.136 55 K 0.036 0.005 0.052 0.303 0.181 0.184 0.239 56 E 0.124 0.050 0.054 0.223 0.117 0.146 0.286 57 L 0.095 0.039 0.019 0.140 0.288 0.089 0.330 58 T 0.050 0.010 0.004 0.093 0.156 0.034 0.654 59 Y 0.001 0.001 0.017 0.895 0.030 0.031 0.024 60 Q 0.001 0.001 0.013 0.946 0.012 0.021 0.007 61 Q 0.001 0.001 0.013 0.948 0.006 0.023 0.008 62 V 0.001 0.001 0.006 0.971 0.004 0.009 0.009 63 Y 0.002 0.001 0.002 0.978 0.004 0.008 0.006 64 D 0.002 0.001 0.002 0.979 0.003 0.009 0.004 65 A 0.001 0.001 0.001 0.982 0.002 0.009 0.004 66 L 0.002 0.001 0.003 0.977 0.003 0.011 0.004 67 L 0.003 0.001 0.006 0.967 0.004 0.017 0.004 68 G 0.002 0.001 0.009 0.957 0.004 0.024 0.004 69 F 0.004 0.002 0.025 0.889 0.009 0.059 0.011 70 L 0.021 0.006 0.024 0.658 0.050 0.192 0.047 71 E 0.019 0.007 0.021 0.358 0.007 0.406 0.182 72 E 0.001 0.001 0.001 0.006 0.002 0.001 0.989