Best Alignments for T0379

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2b0cA/T0379-2b0cA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b0cA/T0379-2b0cA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4725e+002.45e-06
1lcf/T0379-1lcf-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1lcf/T0379-1lcf-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.0500e+002.81e+00 1cb6A c.94.1.2
c.94.1.2
2fhpA/T0379-2fhpA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fhpA/T0379-2fhpA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.0667e+001.50e+01
2c1vA/T0379-2c1vA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2c1vA/T0379-2c1vA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1960e+001.58e-01
2ggcA/T0379-2ggcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ggcA/T0379-2ggcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6863e+002.32e-02
1xnzA/T0379-1xnzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xnzA/T0379-1xnzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.9429e+001.57e-02
2a7oA/T0379-2a7oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2a7oA/T0379-2a7oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.1639e+002.80e-03
1zin/T0379-1zin-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zin/T0379-1zin-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.3512e+007.99e-04 1zin c.37.1.1
g.41.2.1
2eu8A/T0379-2eu8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2eu8A/T0379-2eu8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.6456e+001.29e-04
1oa8A/T0379-1oa8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1oa8A/T0379-1oa8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.9811e+001.38e-03 b.145.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001