# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fhpA 187 7.26e-02 2c1vA 338 1.51e-01 2b81A 323 4.01e-01 1xnzA 264 6.33e-01 1zin 217 7.14e-01 1zin c.37.1.1,g.41.2.1 31915,45178 2ggcA 263 8.46e-01 1ah7 245 8.56e-01 1ah7 a.124.1.1 19339 1aky 221 1.37e+00 1zin c.37.1.1,g.41.2.1 31896,45197 2c3nA 247 1.38e+00 2bidA 197 1.42e+00 2bidA f.1.4.1 43398 1sq5A 308 1.43e+00 c.37.1.6 105882 2esrA 177 1.56e+00 1k0iA 394 1.68e+00 c.3.1.2,d.16.1.2 67942,67943 1uufA 369 1.75e+00 b.35.1.2,c.2.1.1 100006,100007 2eu8A 216 1.80e+00 1vlrA 350 1.90e+00 d.13.1.3,d.246.1.1 108860,108861 1b3uA 588 2.02e+00 1b3uA a.118.1.2 19135 4tmkA 213 2.18e+00 5tmpA c.37.1.1 31930 1ykjA 394 2.34e+00 1xt8A 292 2.43e+00 1gntA 553 2.44e+00 e.26.1.1 70290 1a8s 273 2.72e+00 1brt c.69.1.12 34710 1mtyB 384 2.98e+00 1mtyB a.25.1.2 16740 1omrA 201 3.45e+00 a.39.1.5 93349 1m1cA 680 3.75e+00 e.42.1.1 78395 2ca6A 386 4.18e+00 1lc0A 294 4.64e+00 c.2.1.3,d.81.1.4 73823,73824 1bqbA 301 4.73e+00 1hyt d.92.1.2 58962 1k20A 310 4.84e+00 c.107.1.1 68027 1jgsA 138 5.03e+00 a.4.5.28 66683 1v54J 59 5.50e+00 f.23.4.1 100331 1v0lA 313 5.60e+00 c.1.8.3 108207 1f8fA 371 5.94e+00 b.35.1.2,c.2.1.1 83246,83247 1lk2A 274 6.10e+00 b.1.1.2,d.19.1.1 91056,91057 1oz9A 150 6.29e+00 d.92.1.15 93808 1gu2A 124 6.56e+00 a.3.1.1 76348 1pufB 73 6.76e+00 a.4.1.1 95132 1uhnA 189 6.92e+00 a.39.1.5 99399 2cvzA 289 7.28e+00 1kk8B 139 7.73e+00 a.39.1.5 77430 2a7oA 112 7.95e+00 1ng6A 148 8.68e+00 a.182.1.1 85670 1r9lA 309 9.82e+00 c.94.1.1 97262 1m7bA 184 9.94e+00 c.37.1.8 74572 1wdjA 187 9.98e+00 2b0cA 206 1.01e+01 1kjvA 284 1.02e+01 b.1.1.2,d.19.1.1 77421,77422 1njhA 119 1.05e+01 b.128.1.1 85787 1p7tA 731 1.10e+01 c.1.13.1 94319 1elwA 118 1.10e+01 1a17 a.118.8.1 19207 2ak3A 226 1.10e+01 1zin c.37.1.1,g.41.2.1 31892,45193 1qe3A 489 1.12e+01 2bce c.69.1.1 34630 2f31A 233 1.12e+01 1zcjA 463 1.14e+01 2a5lA 200 1.25e+01 1j09A 468 1.26e+01 a.97.1.1,c.26.1.1 77025,77026 1kktA 511 1.29e+01 a.102.2.1 68687 1ekeA 230 1.31e+01 1ekeA c.55.3.1 33572 1t3qA 168 1.32e+01 a.56.1.1,d.15.4.2 106367,106368 1m98A 317 1.34e+01 a.175.1.1,d.17.4.6 78866,78867 1brwA 433 1.34e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 2gwhA 298 1.36e+01 1ed8A 449 1.37e+01 1b8jA c.76.1.1 34988 1dbqA 289 1.38e+01 1qpzA c.93.1.1 35666 1ei9A 279 1.40e+01 1ei9A c.69.1.13 34713 1i39A 225 1.42e+01 1ekeA c.55.3.1 61585 1jftA 340 1.42e+01 a.35.1.5,c.93.1.1 66652,66653 1tdzA 272 1.45e+01 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 1oa8A 133 1.46e+01 b.145.1.1 92698 2d2eA 250 1.47e+01 1wdpA 495 1.55e+01 1rqtA 37 1.58e+01 a.108.1.1 97771 1ngkA 128 1.64e+01 a.1.1.1 85673 1mwqA 101 1.67e+01 d.58.4.7 91481 2gzaA 361 1.73e+01 1ug3A 339 1.77e+01 1sw6A 327 1.80e+01 1sw6A d.211.1.1 19176 1xl7A 612 1.80e+01 1o3yA 166 1.81e+01 c.37.1.8 86618 1hw6A 278 1.81e+01 1frb c.1.7.1 61296 2bx6A 350 1.83e+01 1pueE 89 1.86e+01 1awcA a.4.5.21 16165 1bg6 359 1.90e+01 1bg6 a.100.1.5,c.2.1.6 18810,30214 1jyrA 96 1.91e+01 d.93.1.1 71969 1n1jA 93 1.94e+01 a.22.1.3 79813 1v32A 101 1.95e+01 a.42.1.1 100277 1pmi 440 1.96e+01 1pmi b.82.1.3 28114 1he1A 135 2.00e+01 1he1A a.24.11.1 16641 1z3eB 73 2.13e+01 2azeA 155 2.16e+01 1eqfA 280 2.27e+01 1eqfA a.29.2.1,a.29.2.1 16972,16973 1jbkA 195 2.28e+01 c.37.1.20 71631 2cwyA 94 2.29e+01 1f5mA 180 2.35e+01 1f5mB d.110.2.1 40895 1odoA 408 2.42e+01 a.104.1.1 92783 1epuA 591 2.45e+01 1dn1A e.25.1.1 43358 1sgwA 214 2.46e+01 c.37.1.12 105541 2gtsA 86 2.48e+01 1avsA 90 2.51e+01 1cll a.39.1.5 17226 1m45A 148 2.52e+01 a.39.1.5 78598 1wf3A 301 2.53e+01 1a4pA 96 2.54e+01 1b4cA a.39.1.2 17176 1wwiA 148 2.55e+01 1zd8A 227 2.60e+01 1w7jB 151 2.61e+01 1khdA 345 2.64e+01 a.46.2.1,c.27.1.1 77400,77401 1e1hB 174 2.65e+01 1tjvA 474 2.70e+01 a.127.1.1 107054 1xwyA 264 2.72e+01 2bl0B 145 2.78e+01 1nq6A 302 2.81e+01 c.1.8.3 92046 1wi0A 113 2.84e+01 1vzyA 291 2.84e+01 1n00A 321 2.87e+01 a.65.1.1 85241 1k7wA 468 2.89e+01 a.127.1.1 72130 1orjA 130 2.90e+01 a.24.19.1 93456 1iqqA 200 2.92e+01 d.124.1.1 66274 1vkpA 383 2.93e+01 d.126.1.6 108686 2g9iA 249 2.95e+01 1fs5A 266 2.98e+01 c.124.1.1 65044 2czlA 272 3.03e+01 1vf6A 83 3.05e+01 a.194.1.1 100600 1khtA 192 3.08e+01 c.37.1.1 84401 1v6zA 228 3.14e+01 2napA 723 3.15e+01 2napA b.52.2.2,c.81.1.1 26926,35334 2b0jA 358 3.17e+01 1ppjE 196 3.17e+01 b.33.1.1,f.23.12.1 104260,104261 1wrjA 156 3.17e+01 1yoeA 322 3.23e+01 1t0qA 498 3.26e+01 a.25.1.2 106220 1wdcB 156 3.30e+01 1wdcB a.39.1.5 17302 1uocA 289 3.32e+01 c.55.3.9 99686 1dw0A 112 3.33e+01 1dw0A a.3.1.1 15911 1qi9A 556 3.34e+01 1qhbA a.111.1.2 19053 1dv0A 47 3.35e+01 1dv0A a.5.2.1 16289 1eca 136 3.37e+01 1flp a.1.1.2 15209 1fpzA 212 3.44e+01 1fpzA c.45.1.1 59976 1e7lA 157 3.54e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 2f4mA 295 3.56e+01 1n2aA 201 3.79e+01 a.45.1.1,c.47.1.5 91553,91554 1gk7A 39 3.79e+01 h.1.20.1 70212 2genA 197 3.85e+01 1sfe 180 3.88e+01 1sfe a.4.2.1,c.55.7.1 16073,33748 1bjaA 95 3.94e+01 1bjaA a.4.5.9 16122 1w4tA 299 4.03e+01 1i7dA 659 4.03e+01 1d6mA e.10.1.1 61886 1wu3I 161 4.10e+01 1upvA 257 4.22e+01 2ftxB 64 4.31e+01 1bqcA 302 4.33e+01 1bqcA c.1.8.3 28831 1yreA 197 4.35e+01 1wq3A 322 4.44e+01 1pprM 312 4.47e+01 1pprM a.131.1.1,a.131.1.1 19502,19503 1dk8A 147 4.47e+01 1agrE a.91.1.1 18548 1viaA 175 4.47e+01 c.37.1.2 100754 1vhnA 318 4.73e+01 c.1.4.1 100693 1xzpB 150 4.74e+01 1v37A 177 4.79e+01 1dt1A 129 4.80e+01 1c52 a.3.1.1 15811 1ci4A 89 4.81e+01 1qckA a.60.5.1 17970 1fjhA 257 4.82e+01 1fjhB c.2.1.2 29870 16vpA 366 4.82e+01 16vpA d.180.1.1 42601 1wmuA 141 4.88e+01 a.1.1.2 109416 2a1kA 233 4.89e+01 1xknA 355 4.91e+01 2ch4A 320 4.98e+01 1wkuA 254 5.00e+01 2d2mC 147 5.03e+01 1r6uA 437 5.05e+01 c.26.1.1 97163 1v8dA 235 5.13e+01 c.140.1.1 108425 1r8sA 164 5.17e+01 c.37.1.8 97247 1wu7A 434 5.19e+01 1lbvA 252 5.19e+01 e.7.1.1 73813 1vr5A 547 5.20e+01 2ezk 99 5.28e+01 2ezk a.4.1.2 16027 2d7vA 162 5.28e+01 1rh5A 436 5.31e+01 f.41.1.1 97464 2f1kA 279 5.33e+01 2fh7A 595 5.40e+01 2aaxA 275 5.42e+01 1nkpB 83 5.44e+01 a.38.1.1 80574 1wlmA 151 5.50e+01 2ahyA 110 5.51e+01 2f6uA 234 5.53e+01 2h7bA 105 5.57e+01 1bgc 174 5.59e+01 1bgc a.26.1.1 16822 1o69A 394 5.65e+01 c.67.1.4 92560 1o7nB 194 5.84e+01 d.17.4.4 81164 1ccwB 483 5.85e+01 1cb7B c.1.19.2 29646 2fueA 262 5.91e+01 1u19A 349 5.99e+01 1k7hA 476 6.07e+01 c.76.1.1 72101 256bA 106 6.08e+01 256bA a.24.3.1 16539 1wstA 417 6.08e+01 2aaoA 166 6.12e+01 1xx1A 285 6.27e+01 2jdxA 385 6.30e+01 1jdw d.126.1.2 41139 2gasA 307 6.38e+01 2exrA 524 6.48e+01 1k3yA 221 6.51e+01 a.45.1.1,c.47.1.5 77245,77246 1zl0A 311 6.52e+01 1yy7A 213 6.54e+01 3lynA 136 6.54e+01 1lis a.19.1.1 16413 1bu8A 452 6.54e+01 1gpl b.12.1.2,c.69.1.19 23647,34795 1r5iD 216 6.65e+01 a.202.1.1 97091 1exrA 148 6.68e+01 1cll a.39.1.5 17299 2b7kA 200 6.70e+01 1nlwB 76 6.75e+01 a.38.1.1 80634 1fvkA 189 6.75e+01 1fvkA c.47.1.13 90351 1xccA 220 6.80e+01 1bo4A 168 6.96e+01 1bo4A d.108.1.1 40798 1k1eA 180 6.98e+01 c.108.1.5 67995 1ip9A 85 6.99e+01 1ip9A d.15.2.2 62638 1z5zA 271 7.00e+01 1g2cB 43 7.01e+01 1g2cB 1wlsA 328 7.04e+01 1ae9A 179 7.08e+01 1ae9A d.163.1.1 42153 1ozhA 566 7.20e+01 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2lisA 136 7.21e+01 1lis a.19.1.1 16405 1tf5A 844 7.22e+01 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1nynA 131 7.22e+01 d.235.1.1 86410 1s14A 194 7.24e+01 d.122.1.2 98329 2gh1A 301 7.27e+01 1yqyA 523 7.27e+01 1c52 131 7.34e+01 1c52 a.3.1.1 15810 1auiB 169 7.38e+01 1auiB a.39.1.5 17325 2g3bA 208 7.41e+01 1y10A 407 7.47e+01 2bzlA 325 7.50e+01 2b7aA 293 7.64e+01 1mtyD 512 7.71e+01 1mhyD a.25.1.2 16742 2trcP 217 7.73e+01 1b9yC c.47.1.6 33051 1gnwA 211 7.84e+01 1gnwA a.45.1.1,c.47.1.5 17727,33021 1jdw 423 7.85e+01 1jdw d.126.1.2 41129 2amdA 311 7.97e+01 1zljA 78 8.05e+01 1ghpA 258 8.12e+01 1btl e.3.1.1 60520 1ib8A 164 8.21e+01 b.38.2.1,d.52.4.1 71168,71169 1wyuA 438 8.26e+01 1j1nA 492 8.29e+01 c.94.1.1 83978 1p4cA 380 8.31e+01 c.1.4.1 94100 1dgnA 89 8.31e+01 1dgnA a.77.1.3 18436 1hl9A 449 8.34e+01 b.71.1.3,c.1.8.11 90650,90651 1ss4A 153 8.35e+01 d.32.1.6 105976 1yqdA 366 8.41e+01 1sczA 233 8.44e+01 c.43.1.1 98802 2b2aA 199 8.45e+01 1ctqA 166 8.50e+01 1ctqA c.37.1.8 31965 1h3qA 140 8.53e+01 d.110.4.3 76652 1ohlA 342 8.57e+01 c.1.10.3 87035 1u2eA 289 8.59e+01 1r5lA 262 8.68e+01 a.5.3.1,c.13.1.1 97099,97100 2f2gA 221 8.84e+01 1p4kA 295 8.87e+01 d.153.1.5 87772 1r69 69 8.91e+01 1r69 a.35.1.2 17028 1v2zA 111 8.92e+01 a.186.1.1 108300 1qhxA 178 8.94e+01 1qhsA c.37.1.3 31936 2d5xB 146 8.97e+01