# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2b0cA 206 7.19e-01 2a7oA 112 1.18e+00 1xnzA 264 1.53e+00 1ohlA 342 1.55e+00 c.1.10.3 87035 1wdcB 156 1.74e+00 1wdcB a.39.1.5 17302 2ggcA 263 1.88e+00 1kk8B 139 1.90e+00 a.39.1.5 77430 1t3qA 168 2.00e+00 a.56.1.1,d.15.4.2 106367,106368 2eu8A 216 2.04e+00 1ug3A 339 2.05e+00 1jyrA 96 2.06e+00 d.93.1.1 71969 1oa8A 133 2.65e+00 b.145.1.1 92698 1omrA 201 2.71e+00 a.39.1.5 93349 1vlrA 350 2.80e+00 d.13.1.3,d.246.1.1 108860,108861 2fhpA 187 2.90e+00 1njhA 119 3.30e+00 b.128.1.1 85787 2bidA 197 4.22e+00 2bidA f.1.4.1 43398 2cwyA 94 4.25e+00 1jbkA 195 4.43e+00 c.37.1.20 71631 1zin 217 4.51e+00 1zin c.37.1.1,g.41.2.1 31915,45178 1pp0A 199 5.03e+00 d.103.1.1 104211 1o08A 221 5.17e+00 c.108.1.6 86525 2d1pB 119 5.20e+00 2a1kA 233 6.12e+00 1h4pA 408 6.24e+00 c.1.8.3 90617 1wjuA 100 6.87e+00 1dv0A 47 7.18e+00 1dv0A a.5.2.1 16289 1p4cA 380 7.44e+00 c.1.4.1 94100 1zb1A 392 7.51e+00 1ng6A 148 7.66e+00 a.182.1.1 85670 2esrA 177 8.38e+00 1uufA 369 8.40e+00 b.35.1.2,c.2.1.1 100006,100007 1aky 221 9.00e+00 1zin c.37.1.1,g.41.2.1 31896,45197 1mtyB 384 9.24e+00 1mtyB a.25.1.2 16740 2b0jA 358 9.42e+00 1ah7 245 9.69e+00 1ah7 a.124.1.1 19339 1uc8A 280 9.84e+00 c.30.1.6,d.142.1.7 99165,99166 1uxy 340 1.01e+01 2mbr d.145.1.2,d.146.1.1 41748,41761 1k0iA 394 1.11e+01 c.3.1.2,d.16.1.2 67942,67943 1xlyA 234 1.11e+01 1rqtA 37 1.13e+01 a.108.1.1 97771 1ykjA 394 1.19e+01 1ou0A 207 1.22e+01 c.23.17.1 93536 1byi 224 1.35e+01 1byi c.37.1.10 32199 1r3dA 264 1.43e+01 2trcP 217 1.50e+01 1b9yC c.47.1.6 33051 2genA 197 1.55e+01 1vqzA 341 1.60e+01 2d2mC 147 1.64e+01 1gu2A 124 1.77e+01 a.3.1.1 76348 1wyuA 438 1.80e+01 1pufB 73 1.86e+01 a.4.1.1 95132 1ghpA 258 1.93e+01 1btl e.3.1.1 60520 2ca6A 386 1.94e+01 1rowA 109 1.98e+01 b.1.11.2 97676 2b2aA 199 1.98e+01 2gzaA 361 1.99e+01 1v0lA 313 2.14e+01 c.1.8.3 108207 1xknA 355 2.14e+01 1dbqA 289 2.15e+01 1qpzA c.93.1.1 35666 2g3bA 208 2.16e+01 1ty0A 211 2.22e+01 b.40.2.2,d.15.6.1 107440,107441 1oz9A 150 2.23e+01 d.92.1.15 93808 1jgsA 138 2.24e+01 a.4.5.28 66683 1nrvA 105 2.26e+01 d.93.1.1 86126 1w8gA 234 2.26e+01 1i39A 225 2.29e+01 1ekeA c.55.3.1 61585 1v54J 59 2.31e+01 f.23.4.1 100331 1w7jB 151 2.31e+01 2gwdA 449 2.40e+01 1z3eB 73 2.48e+01 1cdcA 99 2.53e+01 1cdcA b.1.1.1 19746 2c1vA 338 2.54e+01 1dt1A 129 2.56e+01 1c52 a.3.1.1 15811 1ekeA 230 2.75e+01 1ekeA c.55.3.1 33572 1n62A 166 2.76e+01 a.56.1.1,d.15.4.2 80090,80091 1k7kA 221 2.83e+01 c.51.4.1 72104 2c4wA 176 2.91e+01 1pmi 440 2.96e+01 1pmi b.82.1.3 28114 1yc9A 442 2.99e+01 1nfp 228 3.00e+01 1nfp c.1.16.2 29555 1z77A 200 3.03e+01 1v32A 101 3.11e+01 a.42.1.1 100277 2cvhA 220 3.14e+01 2cosA 54 3.37e+01 1sb2A 133 3.40e+01 1mo1A 87 3.41e+01 d.94.1.1 91363 2f1kA 279 3.41e+01 1kxpD 458 3.41e+01 a.126.1.1,a.126.1.1,a.126.1.1 73160,73161,73162 1sx7A 164 3.45e+01 2cvzA 289 3.47e+01 1ss4A 153 3.49e+01 d.32.1.6 105976 2dkaA 544 3.54e+01 1914 232 3.79e+01 1914 d.49.1.1,d.49.1.1 83028,83029 1epxA 370 3.87e+01 1fbaA c.1.10.1 29150 1qf5A 431 3.95e+01 1adeA c.37.1.10 32212 1r9lA 309 3.97e+01 c.94.1.1 97262 1j09A 468 4.01e+01 a.97.1.1,c.26.1.1 77025,77026 1nf1A 333 4.04e+01 1nf1A a.116.1.2 19110 1w1oA 534 4.14e+01 d.58.32.4,d.145.1.1 109071,109072 2b81A 323 4.17e+01 1mijA 152 4.20e+01 a.4.1.1 79150 1gk7A 39 4.27e+01 h.1.20.1 70212 1wfyA 104 4.38e+01 1o13A 136 4.50e+01 c.55.5.1 80762 1o7nB 194 4.58e+01 d.17.4.4 81164 2azeA 155 4.61e+01 1m7bA 184 4.70e+01 c.37.1.8 74572 1sq5A 308 4.73e+01 c.37.1.6 105882 1e7lA 157 4.78e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 1bjaA 95 4.85e+01 1bjaA a.4.5.9 16122 1qhxA 178 4.92e+01 1qhsA c.37.1.3 31936 1dszB 85 4.93e+01 2nllB g.39.1.2 45108 2ev7A 64 4.97e+01 1tq4A 413 4.99e+01 c.37.1.8 107201 4tmkA 213 4.99e+01 5tmpA c.37.1.1 31930 1bkjA 240 4.99e+01 1bkjA d.90.1.1 40243 1rh5A 436 5.03e+01 f.41.1.1 97464 1kk1A 410 5.03e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1pcxA 810 5.06e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 1q60A 99 5.08e+01 1ux5A 411 5.13e+01 a.207.1.1 100144 1gsoA 431 5.15e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1p8xA 344 5.21e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1nq6A 302 5.25e+01 c.1.8.3 92046 1tdzA 272 5.31e+01 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 1woqA 267 5.35e+01 c.55.1.10,c.55.1.10 109462,109463 1iooA 196 5.43e+01 d.124.1.1 71250 1nkpB 83 5.44e+01 a.38.1.1 80574 2bl0B 145 5.45e+01 2fh1A 344 5.47e+01 1epuA 591 5.49e+01 1dn1A e.25.1.1 43358 1iba 101 5.54e+01 1iba d.95.1.1 40567 1wu7A 434 5.55e+01 1a92A 50 5.57e+01 1a92A h.4.6.1 45791 1b7yB 785 5.58e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1ufwA 95 5.58e+01 d.58.7.1 99358 1yemA 179 5.68e+01 1gl2B 65 5.73e+01 h.1.15.1 65279 1nd6A 354 5.74e+01 c.60.1.2 80407 1ddf 127 5.76e+01 1ddf a.77.1.2 18423 2dbgA 103 5.78e+01 1kq6A 141 5.79e+01 d.189.1.1 91020 1j1jA 240 5.83e+01 a.118.16.1 90762 1ro5A 201 5.88e+01 d.108.1.3 105023 1repC 251 5.93e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1t7lA 766 6.01e+01 2guhA 214 6.04e+01 1t6t1 118 6.07e+01 1ywqA 200 6.07e+01 1w4vA 119 6.08e+01 1vjnA 220 6.13e+01 d.157.1.4 100825 1ci4A 89 6.14e+01 1qckA a.60.5.1 17970 1avsA 90 6.23e+01 1cll a.39.1.5 17226 1k92A 455 6.26e+01 c.26.2.1,d.210.1.1 68325,68326 1q02A 52 6.31e+01 a.5.2.1 95490 1c1yB 77 6.38e+01 1c1yB d.15.1.5 37618 2a72A 146 6.38e+01 2gkpA 167 6.41e+01 1fvuA 133 6.41e+01 1ixxB d.169.1.1 42345 1y10A 407 6.55e+01 1yoeA 322 6.57e+01 1m45A 148 6.67e+01 a.39.1.5 78598 2gb7A 305 6.77e+01 2ak3A 226 6.78e+01 1zin c.37.1.1,g.41.2.1 31892,45193 1lddA 74 6.82e+01 a.4.5.34 73841 1nlwB 76 6.86e+01 a.38.1.1 80634 1zx4A 192 6.94e+01 1xl7A 612 7.05e+01 3c2c 112 7.07e+01 1ycc a.3.1.1 15885 2cqeA 98 7.08e+01 1f60B 94 7.14e+01 1b64 d.58.12.1 39307 1bl0A 129 7.15e+01 1d5yA a.4.1.8,a.4.1.8 16053,16054 1kb9A 431 7.29e+01 d.185.1.1,d.185.1.1 77311,77312 1sczA 233 7.31e+01 c.43.1.1 98802 1nynA 131 7.34e+01 d.235.1.1 86410 1elwA 118 7.36e+01 1a17 a.118.8.1 19207 2fcwB 80 7.45e+01 1xl3C 92 7.61e+01 1pg4A 652 7.64e+01 e.23.1.1 88067 2b9hA 353 7.66e+01 1v2zA 111 7.90e+01 a.186.1.1 108300 1orjA 130 8.28e+01 a.24.19.1 93456 1vzyA 291 8.35e+01 2bw2A 140 8.36e+01 1wteA 272 8.46e+01 1e9rA 437 8.53e+01 c.37.1.11 64827 1tu9A 134 8.71e+01 a.1.1.2 107320 2f46A 156 8.73e+01 1snrA 341 8.78e+01 b.6.1.3,b.6.1.3 105823,105824 1qv1A 195 8.87e+01 a.39.1.5 96347 1ng7A 60 8.94e+01 a.178.1.1 85671