# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fhpA 187 8.70e-02 2c1vA 338 4.06e-01 2b81A 323 8.37e-01 2ggcA 263 1.09e+00 1xnzA 264 1.16e+00 1sq5A 308 1.23e+00 c.37.1.6 105882 2b0cA 206 1.39e+00 1oa8A 133 2.01e+00 b.145.1.1 92698 1zin 217 2.06e+00 1zin c.37.1.1,g.41.2.1 31915,45178 1t3qA 168 2.31e+00 a.56.1.1,d.15.4.2 106367,106368 2esrA 177 2.43e+00 1uufA 369 2.82e+00 b.35.1.2,c.2.1.1 100006,100007 2eu8A 216 3.08e+00 2cvzA 289 3.27e+00 1xt8A 292 3.44e+00 1ah7 245 3.61e+00 1ah7 a.124.1.1 19339 1omrA 201 3.87e+00 a.39.1.5 93349 1zcjA 463 4.07e+00 2gzaA 361 4.08e+00 1ykjA 394 4.12e+00 1vlrA 350 4.24e+00 d.13.1.3,d.246.1.1 108860,108861 1a8s 273 4.78e+00 1brt c.69.1.12 34710 1k0iA 394 5.50e+00 c.3.1.2,d.16.1.2 67942,67943 1wdjA 187 6.12e+00 2a7oA 112 6.21e+00 1w7jB 151 6.23e+00 1kk8B 139 6.43e+00 a.39.1.5 77430 1jftA 340 6.68e+00 a.35.1.5,c.93.1.1 66652,66653 1wdpA 495 7.80e+00 1k20A 310 7.89e+00 c.107.1.1 68027 1bg6 359 8.24e+00 1bg6 a.100.1.5,c.2.1.6 18810,30214 1fs5A 266 8.44e+00 c.124.1.1 65044 2ca6A 386 8.52e+00 1pufB 73 8.78e+00 a.4.1.1 95132 1aky 221 9.46e+00 1zin c.37.1.1,g.41.2.1 31896,45197 1dbqA 289 9.72e+00 1qpzA c.93.1.1 35666 1b3uA 588 9.96e+00 1b3uA a.118.1.2 19135 1m1cA 680 1.05e+01 e.42.1.1 78395 1ng6A 148 1.06e+01 a.182.1.1 85670 1gu2A 124 1.12e+01 a.3.1.1 76348 1ei9A 279 1.14e+01 1ei9A c.69.1.13 34713 1jyrA 96 1.16e+01 d.93.1.1 71969 1elwA 118 1.17e+01 1a17 a.118.8.1 19207 1jgsA 138 1.19e+01 a.4.5.28 66683 2f31A 233 1.20e+01 1eqfA 280 1.20e+01 1eqfA a.29.2.1,a.29.2.1 16972,16973 1jbkA 195 1.21e+01 c.37.1.20 71631 1ekeA 230 1.24e+01 1ekeA c.55.3.1 33572 1qe3A 489 1.26e+01 2bce c.69.1.1 34630 1hl9A 449 1.27e+01 b.71.1.3,c.1.8.11 90650,90651 2aaoA 166 1.31e+01 2a5lA 200 1.32e+01 1v54J 59 1.33e+01 f.23.4.1 100331 1ngkA 128 1.35e+01 a.1.1.1 85673 1bqbA 301 1.35e+01 1hyt d.92.1.2 58962 1h4pA 408 1.36e+01 c.1.8.3 90617 1j09A 468 1.40e+01 a.97.1.1,c.26.1.1 77025,77026 1f0yA 302 1.45e+01 2hdhA a.100.1.3,c.2.1.6 18793,30197 2ak3A 226 1.45e+01 1zin c.37.1.1,g.41.2.1 31892,45193 1gntA 553 1.51e+01 e.26.1.1 70290 2bidA 197 1.57e+01 2bidA f.1.4.1 43398 1kjvA 284 1.57e+01 b.1.1.2,d.19.1.1 77421,77422 1njhA 119 1.57e+01 b.128.1.1 85787 1mtyB 384 1.60e+01 1mtyB a.25.1.2 16740 2gwhA 298 1.68e+01 1mwqA 101 1.73e+01 d.58.4.7 91481 1vkpA 383 1.74e+01 d.126.1.6 108686 1xknA 355 1.74e+01 1lc0A 294 1.75e+01 c.2.1.3,d.81.1.4 73823,73824 1wdcB 156 1.81e+01 1wdcB a.39.1.5 17302 1ghpA 258 1.82e+01 1btl e.3.1.1 60520 1pueE 89 1.82e+01 1awcA a.4.5.21 16165 4tmkA 213 1.87e+01 5tmpA c.37.1.1 31930 1lk2A 274 1.88e+01 b.1.1.2,d.19.1.1 91056,91057 1i39A 225 1.89e+01 1ekeA c.55.3.1 61585 1kktA 511 1.91e+01 a.102.2.1 68687 1m98A 317 1.97e+01 a.175.1.1,d.17.4.6 78866,78867 1ed8A 449 1.97e+01 1b8jA c.76.1.1 34988 1z3eB 73 2.01e+01 1f5mA 180 2.05e+01 1f5mB d.110.2.1 40895 1t0qA 498 2.06e+01 a.25.1.2 106220 1mw9X 592 2.07e+01 e.10.1.1 91480 2azeA 155 2.19e+01 1bu8A 452 2.19e+01 1gpl b.12.1.2,c.69.1.19 23647,34795 1wf3A 301 2.22e+01 2d2eA 250 2.23e+01 1f8fA 371 2.24e+01 b.35.1.2,c.2.1.1 83246,83247 2bx6A 350 2.26e+01 1hw6A 278 2.27e+01 1frb c.1.7.1 61296 1m45A 148 2.27e+01 a.39.1.5 78598 1byi 224 2.29e+01 1byi c.37.1.10 32199 1v0lA 313 2.30e+01 c.1.8.3 108207 1pmi 440 2.31e+01 1pmi b.82.1.3 28114 16vpA 366 2.33e+01 16vpA d.180.1.1 42601 1tdzA 272 2.51e+01 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 1qf5A 431 2.57e+01 1adeA c.37.1.10 32212 2bl0B 145 2.62e+01 1r9lA 309 2.67e+01 c.94.1.1 97262 2c3nA 247 2.73e+01 1v2zA 111 2.84e+01 a.186.1.1 108300 2napA 723 2.89e+01 2napA b.52.2.2,c.81.1.1 26926,35334 1bgc 174 2.95e+01 1bgc a.26.1.1 16822 1o69A 394 3.07e+01 c.67.1.4 92560 1dk8A 147 3.13e+01 1agrE a.91.1.1 18548 1rh5A 436 3.14e+01 f.41.1.1 97464 1oz9A 150 3.19e+01 d.92.1.15 93808 3lynA 136 3.22e+01 1lis a.19.1.1 16413 1vk3A 615 3.27e+01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1uhnA 189 3.31e+01 a.39.1.5 99399 1p7tA 731 3.50e+01 c.1.13.1 94319 1v6zA 228 3.50e+01 2d2mC 147 3.54e+01 1e1hB 174 3.55e+01 1zd8A 227 3.66e+01 1uocA 289 3.67e+01 c.55.3.9 99686 1gk7A 39 3.74e+01 h.1.20.1 70212 1wmuA 141 3.80e+01 a.1.1.2 109416 1eca 136 3.82e+01 1flp a.1.1.2 15209 1zb1A 392 3.86e+01 2g3bA 208 3.90e+01 1sgwA 214 3.96e+01 c.37.1.12 105541 1svdA 473 3.98e+01 2bkxA 242 4.02e+01 1ci4A 89 4.09e+01 1qckA a.60.5.1 17970 1yy7A 213 4.11e+01 1ug3A 339 4.11e+01 2f8mA 244 4.13e+01 2fueA 262 4.15e+01 1odoA 408 4.15e+01 a.104.1.1 92783 1e7lA 157 4.18e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 1pp0A 199 4.18e+01 d.103.1.1 104211 1r6uA 437 4.18e+01 c.26.1.1 97163 1khdA 345 4.20e+01 a.46.2.1,c.27.1.1 77400,77401 1ss4A 153 4.22e+01 d.32.1.6 105976 1orjA 130 4.24e+01 a.24.19.1 93456 1sczA 233 4.29e+01 c.43.1.1 98802 1n1jA 93 4.29e+01 a.22.1.3 79813 1vhnA 318 4.37e+01 c.1.4.1 100693 1xlyA 234 4.43e+01 1xl7A 612 4.45e+01 1ip9A 85 4.46e+01 1ip9A d.15.2.2 62638 2aaxA 275 4.50e+01 1wi0A 113 4.51e+01 1viaA 175 4.57e+01 c.37.1.2 100754 1xx1A 285 4.59e+01 2b0jA 358 4.64e+01 2genA 197 4.81e+01 1vf6A 83 4.92e+01 a.194.1.1 100600 1nw1A 429 5.04e+01 d.144.1.8 86286 1p4cA 380 5.08e+01 c.1.4.1 94100 1vzyA 291 5.10e+01 1dw0A 112 5.12e+01 1dw0A a.3.1.1 15911 1fpzA 212 5.15e+01 1fpzA c.45.1.1 59976 1nq6A 302 5.15e+01 c.1.8.3 92046 2d5xB 146 5.18e+01 2fpqA 444 5.32e+01 1r5iD 216 5.34e+01 a.202.1.1 97091 2cwyA 94 5.42e+01 1wrjA 156 5.43e+01 1v8dA 235 5.45e+01 c.140.1.1 108425 1ccwB 483 5.51e+01 1cb7B c.1.19.2 29646 1wlmA 151 5.57e+01 1rqtA 37 5.61e+01 a.108.1.1 97771 2gakA 391 5.66e+01 2g76A 335 5.66e+01 1p4kA 295 5.83e+01 d.153.1.5 87772 1tn6A 382 5.84e+01 2bi7A 384 5.85e+01 1jli 112 5.88e+01 1jli a.26.1.2 16884 2fh7A 595 5.99e+01 1xwyA 264 6.05e+01 2b2aA 199 6.07e+01 1yoeA 322 6.11e+01 2bzlA 325 6.17e+01 2f05A 105 6.19e+01 1yqdA 366 6.26e+01 1dv0A 47 6.28e+01 1dv0A a.5.2.1 16289 1iqqA 200 6.34e+01 d.124.1.1 66274 1sfe 180 6.38e+01 1sfe a.4.2.1,c.55.7.1 16073,33748 2csbA 519 6.44e+01 2f4mA 295 6.48e+01 1avsA 90 6.48e+01 1cll a.39.1.5 17226 1pprM 312 6.53e+01 1pprM a.131.1.1,a.131.1.1 19502,19503 1uj6A 227 6.53e+01 c.124.1.4,d.58.40.1 107898,107899 1v32A 101 6.58e+01 a.42.1.1 100277 1wstA 417 6.68e+01 1uxy 340 6.68e+01 2mbr d.145.1.2,d.146.1.1 41748,41761 1uarA 285 6.77e+01 c.46.1.2,c.46.1.2 107762,107763 1i7dA 659 6.79e+01 1d6mA e.10.1.1 61886 2trcP 217 6.82e+01 1b9yC c.47.1.6 33051 2dkaA 544 6.82e+01 1brwA 433 6.83e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 2co5A 99 6.83e+01 1n2aA 201 7.02e+01 a.45.1.1,c.47.1.5 91553,91554 1y10A 407 7.03e+01 1epxA 370 7.04e+01 1fbaA c.1.10.1 29150 1nynA 131 7.14e+01 d.235.1.1 86410 1k1eA 180 7.15e+01 c.108.1.5 67995 2f6uA 234 7.28e+01 2gtsA 86 7.28e+01 1o3yA 166 7.34e+01 c.37.1.8 86618 1bo4A 168 7.36e+01 1bo4A d.108.1.1 40798 1r69 69 7.38e+01 1r69 a.35.1.2 17028 1w4tA 299 7.38e+01 2abwA 227 7.44e+01 1wzaA 488 7.46e+01 1pzlA 237 7.49e+01 a.123.1.1 104393 1ib8A 164 7.59e+01 b.38.2.1,d.52.4.1 71168,71169 2g03A 194 7.60e+01 3c2c 112 7.69e+01 1ycc a.3.1.1 15885 2ahyA 110 7.70e+01 1k7hA 476 7.86e+01 c.76.1.1 72101 2ezk 99 7.89e+01 2ezk a.4.1.2 16027 1bjaA 95 7.94e+01 1bjaA a.4.5.9 16122 1o08A 221 7.94e+01 c.108.1.6 86525 1i4yA 114 7.99e+01 2mhr a.24.4.1 61738 2d7vA 162 8.15e+01 2lisA 136 8.40e+01 1lis a.19.1.1 16405 1jwiB 125 8.49e+01 d.169.1.1 67384 1g2cB 43 8.50e+01 1g2cB 1qhxA 178 8.57e+01 1qhsA c.37.1.3 31936 1u19A 349 8.59e+01 2ftxB 64 8.60e+01 1q8iA 783 8.67e+01 c.55.3.5,e.8.1.1 96208,96209 1w4vA 119 8.73e+01 1lbvA 252 8.81e+01 e.7.1.1 73813 1qi9A 556 8.85e+01 1qhbA a.111.1.2 19053 2awiA 317 8.91e+01 1wkuA 254 8.91e+01 2grrB 170 8.94e+01 1g2rA 100 8.98e+01 1g2rA d.192.1.1 60231