# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2a7oA 112 7.30e-01 1njhA 119 2.41e+00 b.128.1.1 85787 1o9iA 266 3.00e+00 a.25.1.3 92671 2f1kA 279 3.08e+00 1pp0A 199 3.10e+00 d.103.1.1 104211 1jyrA 96 3.41e+00 d.93.1.1 71969 1kk8B 139 3.84e+00 a.39.1.5 77430 1wdcB 156 4.13e+00 1wdcB a.39.1.5 17302 1oa8A 133 5.58e+00 b.145.1.1 92698 1vf6A 83 6.26e+00 a.194.1.1 100600 1wjuA 100 7.58e+00 2chdA 142 9.62e+00 2gzaA 361 1.02e+01 2d1pB 119 1.06e+01 1agqA 135 1.09e+01 1agqA g.17.1.2 44789 1pfiA 46 1.11e+01 1pfiA h.1.4.1 45558 1mijA 152 1.17e+01 a.4.1.1 79150 1tn6A 382 1.32e+01 1w7jB 151 1.34e+01 2bl0B 145 1.38e+01 1vqoI 162 1.41e+01 2bx9A 53 1.45e+01 2c5rA 67 1.62e+01 1gk7A 39 1.64e+01 h.1.20.1 70212 1vjnA 220 1.68e+01 d.157.1.4 100825 1a92A 50 1.70e+01 1a92A h.4.6.1 45791 1yewA 382 1.74e+01 1wfyA 104 1.78e+01 1zb1A 392 1.78e+01 2g5cA 281 1.93e+01 2cwyA 94 2.00e+01 1uc8A 280 2.10e+01 c.30.1.6,d.142.1.7 99165,99166 1b67A 68 2.14e+01 1a7w a.22.1.2 16474 1zin 217 2.14e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1ug3A 339 2.16e+01 1k0iA 394 2.19e+01 c.3.1.2,d.16.1.2 67942,67943 1nd6A 354 2.26e+01 c.60.1.2 80407 1z6uA 150 2.27e+01 1g2cB 43 2.37e+01 1g2cB 2fcwB 80 2.45e+01 1r69 69 2.50e+01 1r69 a.35.1.2 17028 1nekC 129 2.53e+01 f.21.2.2 80431 1tq4A 413 2.65e+01 c.37.1.8 107201 1wvqA 167 2.78e+01 1yx4A 132 2.81e+01 2ggcA 263 3.01e+01 1kxpD 458 3.03e+01 a.126.1.1,a.126.1.1,a.126.1.1 73160,73161,73162 2b0cA 206 3.03e+01 1jbkA 195 3.05e+01 c.37.1.20 71631 1wyuA 438 3.15e+01 1wu3I 161 3.17e+01 1o08A 221 3.18e+01 c.108.1.6 86525 1sqeA 109 3.20e+01 d.58.4.5 105908 1p8xA 344 3.20e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1q08A 99 3.30e+01 a.6.1.3 95497 1vhxA 150 3.35e+01 c.55.3.8 100712 1jb0D 138 3.35e+01 1jb0D d.187.1.1 62823 1gl2B 65 3.35e+01 h.1.15.1 65279 1r3dA 264 3.59e+01 1dgnA 89 3.65e+01 1dgnA a.77.1.3 18436 1dv0A 47 3.65e+01 1dv0A a.5.2.1 16289 1ppjE 196 3.74e+01 b.33.1.1,f.23.12.1 104260,104261 1fhgA 154 3.77e+01 1tlk b.1.1.4 21706 1xhdA 173 3.81e+01 1o7nB 194 3.97e+01 d.17.4.4 81164 1wgsA 133 4.03e+01 2bnmA 198 4.06e+01 1l6kA 77 4.13e+01 h.6.1.1 77724 1sq5A 308 4.14e+01 c.37.1.6 105882 1ykjA 394 4.15e+01 3pcgA 200 4.17e+01 3pchA b.3.6.1 22647 1ty0A 211 4.18e+01 b.40.2.2,d.15.6.1 107440,107441 1jgsA 138 4.21e+01 a.4.5.28 66683 2genA 197 4.22e+01 1dwnA 127 4.37e+01 1dwnA d.85.1.1 40141 2a72A 146 4.37e+01 3lynA 136 4.40e+01 1lis a.19.1.1 16413 1jk8B 190 4.42e+01 1iakB b.1.1.2,d.19.1.1 63147,63148 1p4cA 380 4.51e+01 c.1.4.1 94100 2eu8A 216 4.56e+01 1ohlA 342 4.57e+01 c.1.10.3 87035 1ebfA 358 4.63e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1iba 101 4.89e+01 1iba d.95.1.1 40567 1omrA 201 4.94e+01 a.39.1.5 93349 1u3eM 174 4.96e+01 d.4.1.3,d.285.1.1 107640,107641 2ctoA 93 5.04e+01 1dozA 309 5.06e+01 1ak1 c.92.1.1 35592 1bl0A 129 5.07e+01 1d5yA a.4.1.8,a.4.1.8 16053,16054 1iy8A 267 5.10e+01 c.2.1.2 83774 1n2aA 201 5.10e+01 a.45.1.1,c.47.1.5 91553,91554 1idrA 136 5.15e+01 1dlyA a.1.1.1 62301 1vd4A 62 5.24e+01 3c2c 112 5.39e+01 1ycc a.3.1.1 15885 1hzdA 272 5.42e+01 c.14.1.3 65969 1k3bB 164 5.51e+01 d.3.1.1 72015 1xnzA 264 5.57e+01 1ou0A 207 5.60e+01 c.23.17.1 93536 1riiA 265 5.68e+01 2gwdA 449 5.80e+01 1p2zA 968 5.99e+01 b.121.2.2,b.121.2.2 93962,93963 1cnzA 363 6.13e+01 1cnzA c.77.1.1 35061 1y10A 407 6.13e+01 1w1nA 33 6.21e+01 1h4pA 408 6.23e+01 c.1.8.3 90617 1a4pA 96 6.26e+01 1b4cA a.39.1.2 17176 2f8lA 344 6.31e+01 1wmmA 145 6.35e+01 2cqeA 98 6.44e+01 1vggA 161 6.50e+01 1vdkA 466 6.51e+01 a.127.1.1 100561 2a1kA 233 6.52e+01 1ghpA 258 6.59e+01 1btl e.3.1.1 60520 1j1jA 240 6.61e+01 a.118.16.1 90762 2fbhA 146 6.65e+01 2dg5A 366 6.67e+01 1mo1A 87 6.68e+01 d.94.1.1 91363 1oz9A 150 6.72e+01 d.92.1.15 93808 1q60A 99 6.74e+01 1epuA 591 6.78e+01 1dn1A e.25.1.1 43358 1vs0A 310 7.05e+01 1m93A 55 7.29e+01 e.1.1.1 91235 1rdqE 350 7.43e+01 d.144.1.7 97314 1orjA 130 7.47e+01 a.24.19.1 93456 1iv8A 720 7.56e+01 b.71.1.1,c.1.8.1 76842,76843 1u7bA 261 7.61e+01 2d2mC 147 7.65e+01 1a7w 69 7.69e+01 1a7w a.22.1.2 16477 1rowA 109 7.73e+01 b.1.11.2 97676 1g9pA 45 7.91e+01 g.3.6.2 65171 2aefA 234 8.04e+01 2ftzA 284 8.06e+01 2gkpA 167 8.09e+01 1tjxA 159 8.17e+01 1pnbA 31 8.19e+01 1pnbA a.52.1.3 17828 1u5xA 140 8.37e+01 1w33A 181 8.44e+01 1ux5A 411 8.48e+01 a.207.1.1 100144 2gb7A 305 8.51e+01 1vyxA 60 8.66e+01 1aky 221 8.70e+01 1zin c.37.1.1,g.41.2.1 31896,45197 1oh0A 131 8.90e+01 d.17.4.3 87004 2daqA 110 8.91e+01 1q33A 292 8.98e+01 d.113.1.1 95657