(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.soe.ucsc.edu/research/compbio/sam.html
Citations (SAM, SAM-T99, HMMs)
- R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
- K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
- A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
Sequence numbers correspond to the following labels:
-
- T0379 PG0725, Porphyromonas gingivalis W83, 208 res
-
- gi|34540517|ref|NP_904996.1|_15:86 hydrolase, haloacid dehalogenase-like family [Porphyromonas gingivalis W83]
- gi|34396830|gb|AAQ65895.1| hydrolase, haloacid dehalogenase-like family [Porphyromonas gingivalis W83]
10 20 30 40 50 60
| | | | | |
1 ...HLNREESIRRFKAIGVADIEEMLDPYLQKGLFLDLESGRKSEEEFRTELSRYIGKELTYQQV
2 vliHLNREESIRRFKAIGVADIEEMLDPYLQKGLFLDLESGRKSEEEFRTELSRYIGKELTYQQV
70
|
1 YDALLGFLEE...
2 YDALLGFLEEisa