# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2a7oA 112 1.00e-00 1egaA 301 1.04e+00 1egaA c.37.1.8,d.52.3.1 32150,38836 1pp0A 199 2.91e+00 d.103.1.1 104211 1njhA 119 3.00e+00 b.128.1.1 85787 1xpxA 163 4.03e+00 1jyrA 96 4.09e+00 d.93.1.1 71969 2gzaA 361 4.09e+00 1pbe 394 4.30e+00 1pbe c.3.1.2,d.16.1.2 30338,37869 2aobA 99 4.60e+00 1zfpE 98 4.70e+00 1griA d.93.1.1 40465 1oa8A 133 6.34e+00 b.145.1.1 92698 1fxrA 64 6.45e+00 1fxd d.58.1.4 38993 1kk8B 139 7.27e+00 a.39.1.5 77430 1wjuA 100 7.71e+00 1wdcB 156 7.95e+00 1wdcB a.39.1.5 17302 1k0iA 394 8.89e+00 c.3.1.2,d.16.1.2 67942,67943 1ld8A 382 9.67e+00 a.118.6.1 73838 3pcgA 200 9.80e+00 3pchA b.3.6.1 22647 2d1pB 119 1.06e+01 2chdA 142 1.11e+01 2bl0B 145 1.17e+01 1ohlA 342 1.21e+01 c.1.10.3 87035 2b0cA 206 1.25e+01 1ty0A 211 1.26e+01 b.40.2.2,d.15.6.1 107440,107441 1o08A 221 1.27e+01 c.108.1.6 86525 4xis 387 1.40e+01 4xis c.1.15.3 29421 1c24A 263 1.44e+01 1c24A d.127.1.1 41148 2aucA 126 1.44e+01 1h7nA 342 1.44e+01 1b4kA c.1.10.3 60726 1uc8A 280 1.54e+01 c.30.1.6,d.142.1.7 99165,99166 1ykjA 394 1.60e+01 1rec 201 1.61e+01 1rec a.39.1.5 17326 2f1kA 279 1.62e+01 1mijA 152 1.64e+01 a.4.1.1 79150 1th8A 145 1.78e+01 d.122.1.3 106908 1tn6A 382 1.83e+01 1jbkA 195 1.84e+01 c.37.1.20 71631 2ggcA 263 1.91e+01 1nd6A 354 1.92e+01 c.60.1.2 80407 1zb1A 392 1.93e+01 3xis 387 2.10e+01 4xis c.1.15.3 29423 1vhxA 150 2.13e+01 c.55.3.8 100712 1wyuA 438 2.13e+01 1o9iA 266 2.25e+01 a.25.1.3 92671 1jkvA 266 2.30e+01 a.25.1.3 71719 1k2fA 190 2.32e+01 b.8.1.2 68054 1b67A 68 2.46e+01 1a7w a.22.1.2 16474 1vjnA 220 2.63e+01 d.157.1.4 100825 1idrA 136 2.71e+01 1dlyA a.1.1.1 62301 1wfyA 104 2.74e+01 2hpaA 342 2.76e+01 1cviA c.60.1.2 33985 2cwyA 94 2.81e+01 1dat 174 2.90e+01 2fha a.25.1.1 16677 1w7jB 151 2.90e+01 1a0rP 245 3.10e+01 1b9yC c.47.1.6 33054 1zin 217 3.17e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1p8xA 344 3.26e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1yewA 382 3.33e+01 1j1jA 240 3.34e+01 a.118.16.1 90762 1zip 217 3.36e+01 1zin c.37.1.1,g.41.2.1 31916,45179 1h4pA 408 3.43e+01 c.1.8.3 90617 1u5xA 140 3.47e+01 1z6uA 150 3.57e+01 1dmmA 131 3.57e+01 1opy d.17.4.3 38114 1vqzA 341 3.59e+01 1z9fA 153 3.63e+01 1wvqA 167 3.70e+01 1yezA 68 3.73e+01 1y10A 407 3.75e+01 1t3qA 168 3.76e+01 a.56.1.1,d.15.4.2 106367,106368 1yx4A 132 3.80e+01 1l4iA 206 3.92e+01 b.1.11.1,b.7.2.1 73564,73565 1dgnA 89 3.95e+01 1dgnA a.77.1.3 18436 1r3dA 264 4.04e+01 1xnzA 264 4.04e+01 1wu3I 161 4.09e+01 1r69 69 4.10e+01 1r69 a.35.1.2 17028 2bidA 197 4.12e+01 2bidA f.1.4.1 43398 2gwdA 449 4.12e+01 1agqA 135 4.15e+01 1agqA g.17.1.2 44789 3c2c 112 4.18e+01 1ycc a.3.1.1 15885 1gk7A 39 4.24e+01 h.1.20.1 70212 1nekC 129 4.30e+01 f.21.2.2 80431 1omrA 201 4.31e+01 a.39.1.5 93349 1tlk 154 4.31e+01 1tlk b.1.1.4 21707 2aefA 234 4.42e+01 2eu8A 216 4.56e+01 1dv0A 47 4.56e+01 1dv0A a.5.2.1 16289 1ghpA 258 4.57e+01 1btl e.3.1.1 60520 1a92A 50 4.69e+01 1a92A h.4.6.1 45791 1p4cA 380 4.70e+01 c.1.4.1 94100 1nstA 325 4.78e+01 1nstA c.37.1.5 31951 1o5oA 221 4.80e+01 c.61.1.1 92509 1keyA 235 4.81e+01 a.118.16.1 72389 1fhgA 154 4.83e+01 1tlk b.1.1.4 21706 1ux5A 411 4.84e+01 a.207.1.1 100144 1furA 467 4.88e+01 1furA a.127.1.1 19403 1vf6A 83 4.94e+01 a.194.1.1 100600 2bnkA 67 4.95e+01 2d2mD 145 5.10e+01 1jk8B 190 5.30e+01 1iakB b.1.1.2,d.19.1.1 63147,63148 1uxy 340 5.32e+01 2mbr d.145.1.2,d.146.1.1 41748,41761 1n2aA 201 5.40e+01 a.45.1.1,c.47.1.5 91553,91554 1vqoI 162 5.41e+01 1iba 101 5.59e+01 1iba d.95.1.1 40567 1iy8A 267 5.73e+01 c.2.1.2 83774 2ac4A 309 5.86e+01 3lynA 136 5.87e+01 1lis a.19.1.1 16413 1jgsA 138 5.88e+01 a.4.5.28 66683 1a0fA 201 6.15e+01 1a0fA a.45.1.1,c.47.1.5 17737,33031 1opy 131 6.15e+01 1opy d.17.4.3 38113 2kinA 238 6.19e+01 1bg2 c.37.1.9 32190 1axdA 209 6.21e+01 1gnwA a.45.1.1,c.47.1.5 17730,33024 2genA 197 6.33e+01 2fcwB 80 6.36e+01 2ac2A 309 6.53e+01 2a72A 146 6.61e+01 1ug3A 339 6.61e+01 1wwuA 99 6.68e+01 2c5rA 67 6.73e+01 1riiA 265 6.75e+01 1orjA 130 6.75e+01 a.24.19.1 93456 2bnmA 198 6.90e+01 2ah5A 210 6.99e+01 1q60A 99 7.04e+01 1cnzA 363 7.13e+01 1cnzA c.77.1.1 35061 1ebfA 358 7.18e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1vggA 161 7.19e+01 1qopB 396 7.31e+01 2tysB c.79.1.1 35270 1cyj 90 7.42e+01 1ctj a.3.1.1 15805 1wgsA 133 7.42e+01 1s72I 162 7.52e+01 a.4.7.1 105328 1aky 221 7.59e+01 1zin c.37.1.1,g.41.2.1 31896,45197 1rowA 109 7.62e+01 b.1.11.2 97676 1p2zA 968 7.65e+01 b.121.2.2,b.121.2.2 93962,93963 1yzbA 182 7.65e+01 1idaA 99 7.66e+01 1fmb b.50.1.1 26715 6paxA 133 7.92e+01 6paxA a.4.1.5,a.4.1.5 64758,64759 1dozA 309 8.15e+01 1ak1 c.92.1.1 35592 2d2mC 147 8.16e+01 2dg5A 366 8.18e+01 1ah7 245 8.19e+01 1ah7 a.124.1.1 19339 1tq4A 413 8.19e+01 c.37.1.8 107201 1vydA 116 8.21e+01 a.3.1.1 108900 2ftzA 284 8.23e+01 1zmbA 290 8.40e+01 1d8dA 377 8.42e+01 1ft1A a.118.6.1 19185 1sqeA 109 8.55e+01 d.58.4.5 105908 2gkpA 167 8.57e+01 2d9rA 104 8.68e+01 1bl0A 129 8.73e+01 1d5yA a.4.1.8,a.4.1.8 16053,16054 1z3eB 73 8.74e+01 1pfiA 46 8.75e+01 1pfiA h.1.4.1 45558 1epuA 591 8.75e+01 1dn1A e.25.1.1 43358 1lox 662 8.76e+01 1lox a.119.1.2,b.12.1.1 19238,23638 1uk5A 111 8.82e+01 a.7.7.1 99487 1z0jB 59 8.89e+01