CreatePredAlphaCost pred_alpha2k alpha11 T0378.t2k.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha04 alpha11 T0378.t04.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha06 alpha11 T0378.t06.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 15 dry6.5 20 dry8 15 dry12 5 \ phobic_fit 2 \ n_ca_c 10 bad_peptide 20 \ sidechain 5 \ bystroff 8 \ soft_clashes 20 backbone_clashes 2 \ break 50 \ pred_alpha2k 3 \ pred_alpha04 4 \ pred_alpha06 5 \ hbond_geom 5 \ hbond_geom_backbone 10 \ hbond_geom_beta 50 \ hbond_geom_beta_pair 100 \ missing_atoms 1 \ deep_knot 10