CreatePredAlphaCost pred_alpha2k alpha11 T0378.t2k.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha04 alpha11 T0378.t04.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha06 alpha11 T0378.t06.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 20 dry6.5 40 dry8 30 dry12 8 \ phobic_fit 2 \ sidechain 3 \ n_ca_c 5 bad_peptide 10 \ bystroff 5 \ soft_clashes 80 backbone_clashes 2 \ break 300 \ pred_alpha2k 2 \ pred_alpha04 2 \ pred_alpha06 2 \ hbond_geom 5 \ hbond_geom_backbone 10 \ hbond_geom_beta 50 \ hbond_geom_beta_pair 100 \ missing_atoms 1 \ maybe_metal 0.5 \ maybe_ssbond 1 // polishing #try3-opt2.helices HelixConstraint (T0378)S3 (T0378)Q23 1 HelixConstraint (T0378)G29 (T0378)L37 1 HelixConstraint (T0378)A49 (T0378)T57 0.8 HelixConstraint (T0378)S69 (T0378)K73 0.7 HelixConstraint (T0378)D110 (T0378)G125 1 HelixConstraint (T0378)V143 (T0378)M148 1 HelixConstraint (T0378)N161 (T0378)Q172 1 HelixConstraint (T0378)S210 (T0378)A215 1 HelixConstraint (T0378)N238 (T0378)S254 1 #changed : hopeing that this will be able to close the break #HelixConstraint (T0378)E68 (T0378)R74 #to #HelixConstraint (T0378)S69 (T0378)K73 #and added #HelixConstraint (T0378)A49 (T0378)T57 0.8