Rosetta Input/Output Paths (order essential) path is first '/', './',or '../' to next whitespace, must end with '/' INPUT PATHS: pdb1 ./ pdb2 /net/pdb/ alternate data files ../rosetta_database/ fragments ./ structure dssp,ssa (dat,jones) ./ sequence fasta,dat,jones ./ constraints ./ starting structure ./ data files /projects/compbio/programs/rosetta/rosetta_database/ OUTPUT PATHS: movie ./ pdb path ./decoys/ score ./decoys/ status ./ user ./ FRAGMENTS: (use '*****' in place of pdb name and chain) 2 number of valid fragment files 3 frag file 1 size aa*****03_05.???_v1_3 name 9 frag file 2 size aa*****09_05.???_v1_3 name ------------------------------------------------------------------------- CVS information: $Revision: 7117 $ $Date: 2005-12-08 19:19:55 -0800 (Thu, 08 Dec 2005) $ $Author: tex $ -------------------------------------------------------------------------