# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gz0A 253 2.79e-22 c.116.1.1,d.79.3.3 76391,76392 1ipaA 274 5.19e-20 c.116.1.1,d.79.3.3 71254,71255 1x7oA 287 6.29e-19 1v2xA 194 3.87e-16 c.116.1.1 100274 1zjrA 211 1.91e-14 1mxiA 160 8.78e-09 c.116.1.1 79646 1h1yA 228 1.71e-02 c.1.2.2 76506 1qwgA 251 5.38e-01 c.1.27.1 96473 2anuA 255 9.84e-01 1j8yF 297 1.60e+00 1ng1 a.24.13.1,c.37.1.10 62747,62748 1vhyA 257 4.00e+00 b.122.1.2,c.116.1.5 100714,100715 1j8mF 297 4.46e+00 1ng1 a.24.13.1,c.37.1.10 62742,62743 1k3rA 268 4.65e+00 b.40.4.10,c.116.1.2 72018,72019 1vddA 228 4.93e+00 e.49.1.1 108519 1zjjA 263 5.18e+00 1o5zA 442 5.29e+00 c.59.1.2,c.72.2.2 92530,92531 1lrwA 600 5.36e+00 b.70.1.1 91111 2bkaA 242 5.73e+00 1fezA 256 5.87e+00 1fezA c.108.1.3 43343 1u7pA 164 6.09e+00 1rdfA 267 6.10e+00 c.108.1.3 104884 1ah4 315 7.79e+00 1frb c.1.7.1 28684 1nxzA 246 7.96e+00 b.122.1.2,c.116.1.5 86391,86392 1wh5A 80 8.83e+00 1swvA 267 8.86e+00 1ah0 316 8.92e+00 1frb c.1.7.1 28685 1rqlA 267 9.02e+00 c.108.1.3 97750 1t9hA 307 9.75e+00 1ble 163 1.05e+01 1ble c.38.1.1 32475 1m65A 245 1.09e+01 c.6.3.1 84847 3chy 128 1.11e+01 3chy c.23.1.1 31038 1q9jA 422 1.25e+01 c.43.1.2,c.43.1.2 104590,104591 1zxxA 319 1.27e+01 1ab6A 125 1.28e+01 3chy c.23.1.1 31054 1jztA 246 1.28e+01 c.104.1.1 63319 1juk 248 1.31e+01 1a53 c.1.2.4 28567 2f9lA 199 1.35e+01 1spiA 358 1.38e+01 1frpA e.7.1.1 42939 1v6zA 228 1.38e+01 1dyr 206 1.57e+01 1aoeA c.71.1.1 34916 1ab5A 125 1.62e+01 3chy c.23.1.1 31056 1l7mA 211 1.69e+01 c.108.1.4 73664 2a3nA 355 1.70e+01 2dbqA 334 1.75e+01 1az1 315 1.76e+01 1frb c.1.7.1 28677 1f5sA 211 1.78e+01 1f5sA c.108.1.4 59656 1a53 247 1.79e+01 1a53 c.1.2.4 28564 1j97A 211 1.81e+01 1f5sA c.108.1.4 62753 1pwmA 316 1.84e+01 c.1.7.1 95231 1w0mA 226 1.89e+01 c.1.1.1 109027 1igs 248 1.98e+01 1a53 c.1.2.4 28565 2agtA 319 2.00e+01 1cr0A 296 2.03e+01 1cr1A c.37.1.11 32287 2acr 315 2.07e+01 1frb c.1.7.1 28674 1jbeA 128 2.10e+01 3chy c.23.1.1 62845 1z85A 234 2.13e+01 1ads 315 2.14e+01 1frb c.1.7.1 28671 1l6wA 220 2.15e+01 c.1.10.1 73632 1us0A 316 2.15e+01 c.1.7.1 99850 1el3A 316 2.16e+01 1frb c.1.7.1 28672 1cye 129 2.17e+01 3chy c.23.1.1 31077 1e6mA 128 2.27e+01 3chy c.23.1.1 31039 1uc8A 280 2.31e+01 c.30.1.6,d.142.1.7 99165,99166 1wzcA 249 2.33e+01 1av6A 289 2.38e+01 3mag c.66.1.25 34218 1zrn 232 2.48e+01 1qq5A c.108.1.1 43323 2ebn 289 2.49e+01 2ebn c.1.8.5 28990 1tk9A 188 2.49e+01 c.80.1.3 107082 1ve9A 347 2.51e+01 c.4.1.2,d.16.1.3 100571,100572 1g6oA 330 2.55e+01 1g6oA c.37.1.11 32430 1dbiA 280 2.60e+01 1gci c.41.1.1 32543 1vjrA 271 2.64e+01 c.108.1.14 100832 1bmtA 246 2.65e+01 1bmtA a.46.1.1,c.23.6.1 17757,31235 1jud 232 2.68e+01 1qq5A c.108.1.1 43325 1mx3A 347 2.74e+01 c.2.1.4,c.23.12.1 79638,79639 1lvhA 221 2.74e+01 c.108.1.6 74282 1sviA 195 2.78e+01 c.37.1.8 106048 1h7mA 102 2.82e+01 d.79.3.1 83485 1cr1A 296 2.88e+01 1cr1A c.37.1.11 32286 1m3sA 186 2.91e+01 c.80.1.3 78573 1wm1A 317 2.94e+01 c.69.1.7 109405 1y7pA 223 2.98e+01 1mjfA 281 3.03e+01 c.66.1.17 79198 1mi3A 322 3.06e+01 c.1.7.1 91274 1qo2A 241 3.15e+01 1qo2A c.1.2.1 28533 2c3zA 222 3.17e+01 2aaa 484 3.17e+01 7taa b.71.1.1,c.1.8.1 27777,28764 1qumA 285 3.27e+01 1qumA c.1.15.1 29393 1k8cA 322 3.44e+01 c.1.7.1 72172 1twdA 256 3.47e+01 c.1.30.1 107397 1ozjA 144 3.48e+01 d.164.1.1 93846 1an9A 340 3.57e+01 1an9A c.4.1.2,d.16.1.3 30617,37904 1tjvA 474 3.57e+01 a.127.1.1 107054 1auwA 468 3.58e+01 1auwA a.127.1.1 19416 1vheA 373 3.63e+01 b.49.3.1,c.56.5.4 100669,100670 1k7wA 468 3.66e+01 a.127.1.1 72130 1aa8A 347 3.73e+01 1an9A 2cygA 312 3.86e+01 1qtwA 285 3.95e+01 1qumA c.1.15.1 29392 1hl6A 165 3.97e+01 d.58.7.1 83609 2d0iA 333 4.02e+01 1xbtA 193 4.02e+01 1vbuA 328 4.04e+01 1w6sA 599 4.04e+01 2gptA 523 4.23e+01 1dboA 506 4.31e+01 1dbgA b.80.1.4 28034 1oivA 191 4.31e+01 c.37.1.8 93076 1xwsA 313 4.36e+01 1rreA 200 4.43e+01 d.14.1.10 97791 1oejA 193 4.43e+01 b.60.1.4 92798 1xrtA 467 4.45e+01 1oflA 481 4.48e+01 b.80.1.4 103934 1v9nA 360 4.51e+01 1xwoA 465 4.53e+01 2bikB 313 4.56e+01 1dcnA 424 4.57e+01 1auwA a.127.1.1 19420 1rr9A 200 4.61e+01 d.14.1.10 97783 1w4rA 195 4.63e+01 1qtrA 317 4.68e+01 1qtrA c.69.1.7 34660 1dbgA 506 4.73e+01 1dbgA b.80.1.4 28033 2admA 421 4.78e+01 2admA c.66.1.27 34238 1vlmA 219 4.94e+01 c.66.1.41 108836 1vq2A 193 4.98e+01 1szqA 483 5.02e+01 e.44.1.1 99045 1q0pA 223 5.06e+01 c.62.1.1 95507 1txlA 215 5.08e+01 b.60.1.4 107429 1hy0A 466 5.08e+01 1auwA a.127.1.1 61392 1yb5A 351 5.10e+01 1xbiA 120 5.10e+01 1j0hA 588 5.16e+01 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1dcnD 436 5.18e+01 1auwA a.127.1.1 19423 2bgsA 344 5.25e+01 1pjzA 203 5.29e+01 c.66.1.36 94794 1aqjA 421 5.31e+01 2admA c.66.1.27 34242 1rpxA 230 5.33e+01 1rpxA c.1.2.2 28536 2ao0A 324 5.34e+01 2ghrA 302 5.35e+01 1w41A 101 5.39e+01 1n8jA 186 5.39e+01 c.47.1.10 85401 1x1zA 252 5.44e+01 1uok 558 5.47e+01 1uok b.71.1.1,c.1.8.1 27801,28788 1s1pA 331 5.50e+01 c.1.7.1 98350 2cavA 445 5.54e+01 1dgwA b.82.1.2,b.82.1.2 28094,28095 1z6kA 293 5.61e+01 1i0aA 466 5.64e+01 1auwA a.127.1.1 61479 1cnv 299 5.70e+01 1cnv c.1.8.5 28989 1aosA 464 5.75e+01 1auwA a.127.1.1 19414 1omwA 689 5.77e+01 a.91.1.1,b.55.1.1,d.144.1.7 87086,87087,87088 1ur3M 319 5.87e+01 c.1.7.1 99806 2f4mA 295 5.91e+01 1rbp 182 5.93e+01 1aqb b.60.1.1 27085 1x3lA 440 6.04e+01 1geqA 248 6.10e+01 2tysA c.1.2.4 28589 1ualA 274 6.14e+01 c.116.1.4 88383 1g38A 393 6.15e+01 2admA c.66.1.27 60235 1sdsA 117 6.17e+01 d.79.3.1 105439 2aamA 309 6.17e+01 1bmbA 123 6.40e+01 1griA d.93.1.1 40466 1dvjA 246 6.44e+01 1dvjA c.1.2.3 28546 1qi6A 475 6.47e+01 1euhA c.82.1.1 35373 1z5yE 149 6.48e+01 1ht6A 405 6.51e+01 b.71.1.1,c.1.8.1 83629,83630 1u6rA 380 6.61e+01 1sh0A 510 6.64e+01 e.8.1.4 98876 1bfs 106 6.66e+01 1a3qA b.1.18.1 21927 2fliA 220 6.73e+01 1kv8A 216 6.79e+01 c.1.2.3 73054 2c1gA 431 7.01e+01 1dvjC 246 7.04e+01 1dvjA c.1.2.3 28548 1ii7A 333 7.12e+01 1ii7A d.159.1.4 62415 1fxqA 267 7.14e+01 1d9eA c.1.10.4 60108 1o6dA 163 7.30e+01 c.116.1.3 92567 1km4A 247 7.33e+01 c.1.2.3 72740 1ppjE 196 7.33e+01 b.33.1.1,f.23.12.1 104260,104261 1m2kA 249 7.43e+01 c.31.1.5 84754 2phlA 397 7.54e+01 1dgwA b.82.1.2,b.82.1.2 28082,28083 1u5tA 233 7.57e+01 a.4.5.54,a.4.5.54 107684,107685 1q6oA 216 7.58e+01 c.1.2.3 95986 2c1iA 431 7.80e+01 1jq3A 296 7.82e+01 c.66.1.17 67079 1xsjA 778 7.84e+01 1eokA 290 7.85e+01 1eokA c.1.8.5 28991 1xf1A 926 8.02e+01 7taa 478 8.14e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1g59A 468 8.20e+01 a.97.1.1,c.26.1.1 60257,60258 1n0uA 842 8.30e+01 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 79757,79758,79759,79760,79761 1j4aA 333 8.35e+01 c.2.1.4,c.23.12.1 71502,71503 1t8xA 267 8.41e+01 1gxrA 337 8.45e+01 b.69.4.1 70722 1nnlA 225 8.49e+01 c.108.1.4 85906 1ikpA 613 8.50e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1qnrA 344 8.55e+01 1qnoA c.1.8.3 28834 8dfr 189 8.69e+01 1aoeA c.71.1.1 34895 1v3vA 333 8.71e+01 b.35.1.2,c.2.1.1 108345,108346 1m5wA 243 8.75e+01 c.1.24.1 84836 1og6A 298 8.78e+01 c.1.7.1 86984 1c3yA 108 8.85e+01 1c3yA a.39.2.1 17387