Best Alignments for T0378

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1gz0A/T0378-1gz0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gz0A/T0378-1gz0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.7600e-297.50e-125 c.116.1.1
d.79.3.3
1x7oA/T0378-1x7oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1x7oA/T0378-1x7oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8951e-261.71e-113
1v2xA/T0378-1v2xA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1v2xA/T0378-1v2xA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2377e-205.53e-79 c.116.1.1
1zjrA/T0378-1zjrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zjrA/T0378-1zjrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5327e-196.74e-77
1z85A/T0378-1z85A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1z85A/T0378-1z85A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4609e-028.92e-30
1v6zA/T0378-1v6zA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1v6zA/T0378-1v6zA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1359e-029.63e-23
1vhyA/T0378-1vhyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vhyA/T0378-1vhyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.3031e-023.50e-24 b.122.1.2
c.116.1.5
2as0A/T0378-2as0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2as0A/T0378-2as0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5118e-013.32e-26
1qwgA/T0378-1qwgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qwgA/T0378-1qwgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.9237e-011.92e-21 c.1.27.1
1sdsA/T0378-1sdsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1sdsA/T0378-1sdsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.3878e-013.46e-12 d.79.3.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001