# List of top-scoring protein chains for T0378.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gz0A 253 9.76e-29 c.116.1.1,d.79.3.3 76391,76392 1ipaA 274 2.49e-24 c.116.1.1,d.79.3.3 71254,71255 1x7oA 287 7.29e-24 1v2xA 194 1.87e-20 c.116.1.1 100274 1zjrA 211 1.36e-17 1mxiA 160 7.16e-16 c.116.1.1 79646 2cwlA 302 2.18e-01 1pe1A 267 2.50e+00 c.1.10.4 94591 1fbkA 248 2.60e+00 1c3wA f.13.1.1 43426 1c8rA 249 2.64e+00 1c3wA f.13.1.1 43407 1s53A 227 2.66e+00 f.13.1.1 98521 1zhaA 267 2.68e+00 1s54A 227 2.81e+00 f.13.1.1 98523 1pxsA 249 2.82e+00 f.13.1.1 95299 1p8iA 249 2.89e+00 f.13.1.1 87945 1s51A 227 2.89e+00 f.13.1.1 98517 1e0pA 228 2.93e+00 1c3wA f.13.1.1 43416 1kgbA 231 2.93e+00 f.13.1.1 68581 1r84A 232 2.95e+00 f.13.1.1 97218 1l0mA 212 2.99e+00 f.13.1.1 73402 1lroA 267 3.01e+00 c.1.10.4 78161 1s52A 227 3.05e+00 f.13.1.1 98519 1cwqA 248 3.05e+00 1c3wA f.13.1.1 43412 1brrA 247 3.05e+00 1c3wA f.13.1.1 43421 1xjiA 247 3.07e+00 1qhjA 248 3.07e+00 1c3wA f.13.1.1 43409 1p8hA 249 3.07e+00 f.13.1.1 87944 1pxrA 249 3.19e+00 f.13.1.1 95297 1m0kA 262 3.21e+00 f.13.1.1 78344 1tn5A 249 3.46e+00 1tn0A 249 3.53e+00 1p8uA 249 3.60e+00 f.13.1.1 87983 1jv6A 249 3.60e+00 f.13.1.1 67346 1f50A 227 3.64e+00 1c3wA f.13.1.1 43406 1c3wA 222 3.65e+00 1c3wA f.13.1.1 43405 1mgyA 249 3.82e+00 f.13.1.1 84959 2gfvA 427 3.84e+00 1yzkA 184 4.12e+00 1z85A 234 4.34e+00 1q5jA 249 4.64e+00 f.13.1.1 95898 1qtwA 285 4.90e+00 1qumA c.1.15.1 29392 1szqA 483 5.14e+00 e.44.1.1 99045 1wlsA 328 5.15e+00 1uazA 254 5.29e+00 f.13.1.1 88392 1zemA 262 5.37e+00 2aqjA 538 5.88e+00 2atvA 196 6.50e+00 2fjrA 189 6.63e+00 1vgoA 253 9.65e+00 1zhoA 228 1.00e+01 1vhkA 268 1.01e+01 b.122.1.2,c.116.1.5 100680,100681 1eg0N 229 1.01e+01 1ad2 i.1.1.1 45820 1oivA 191 1.06e+01 c.37.1.8 93076 1kas 412 1.10e+01 1dd8A c.95.1.1,c.95.1.1 35964,35965 1ek6A 348 1.11e+01 1xel c.2.1.2 29800 2gfyA 427 1.11e+01 2gfwA 427 1.12e+01 1q5iA 249 1.14e+01 f.13.1.1 95896 2aiqA 231 1.15e+01 1op2A 234 1.21e+01 b.47.1.2 104020 1h1yA 228 1.24e+01 c.1.2.2 76506 1op0A 234 1.25e+01 b.47.1.2 104019 1z8rA 166 1.27e+01 1tc5A 194 1.29e+01 c.110.1.1 106752 1qcwA 410 1.29e+01 1gox c.1.4.1 28622 1oixA 191 1.29e+01 1eaqA 140 1.31e+01 b.2.5.6 76144 2a9fA 398 1.34e+01 487dH 224 1.37e+01 1ad2 i.1.1.2 45835 1rqjA 299 1.40e+01 a.128.1.1 97744 1rqiA 300 1.40e+01 a.128.1.1 97742 1ad2 228 1.41e+01 1ad2 e.24.1.1 43353 1c8sA 196 1.41e+01 1c3wA f.13.1.1 43410 1v6zA 228 1.43e+01 1jztA 246 1.47e+01 c.104.1.1 63319 1zosA 230 1.52e+01 2forA 323 1.53e+01 1zxxA 319 1.57e+01 2fkdA 110 1.57e+01 1zwhA 240 1.63e+01 1nu5A 370 1.64e+01 c.1.11.2,d.54.1.1 92183,92184 1hzjA 348 1.64e+01 1xel c.2.1.2 61450 1bgq 225 1.70e+01 1yer d.122.1.1 41098 2brcA 214 1.74e+01 1am1 213 1.75e+01 1yer d.122.1.1 41095 1a4h 230 1.83e+01 1yer d.122.1.1 41099 2breA 219 1.86e+01 1ah6 220 1.87e+01 1yer d.122.1.1 41094 1o5zA 442 1.93e+01 c.59.1.2,c.72.2.2 92530,92531 2ac3A 316 2.02e+01 1bmtA 246 2.07e+01 1bmtA a.46.1.1,c.23.6.1 17757,31235 1wznA 252 2.13e+01 1bqyA 234 2.16e+01 5ptp b.47.1.2 26332 1u08A 386 2.24e+01 c.67.1.1 107543 1q9jA 422 2.27e+01 c.43.1.2,c.43.1.2 104590,104591 1sdsA 117 2.27e+01 d.79.3.1 105439 1vjiA 372 2.30e+01 c.1.4.1 100813 1kbjA 412 2.31e+01 c.1.4.1 72280 2ac5A 316 2.31e+01 1xbiA 120 2.37e+01 1vhyA 257 2.37e+01 b.122.1.2,c.116.1.5 100714,100715 1nxzA 246 2.41e+01 b.122.1.2,c.116.1.5 86391,86392 1ltdA 506 2.46e+01 1gox c.1.4.1,d.120.1.1 28618,41086 1lcoA 511 2.47e+01 1gox c.1.4.1,d.120.1.1 28624,41088 1kbiA 511 2.47e+01 c.1.4.1,d.120.1.1 72277,72278 2ar0A 541 2.51e+01 1s1iG 119 2.54e+01 i.1.1.1 105181 2as0A 396 2.57e+01 1uufA 369 2.58e+01 b.35.1.2,c.2.1.1 100006,100007 1szfA 511 2.63e+01 c.1.4.1 106153 1i3kA 348 2.65e+01 1xel c.2.1.2 61595 1szeA 511 2.66e+01 c.1.4.1 106151 1el6A 219 2.68e+01 1el6B d.182.1.1 42606 2gjxA 507 2.79e+01 1an9A 340 2.87e+01 1an9A c.4.1.2,d.16.1.3 30617,37904 1mzjA 339 2.88e+01 c.95.1.2,c.95.1.2 79700,79701 2akpA 186 2.89e+01 1ve9A 347 2.91e+01 c.4.1.2,d.16.1.3 100571,100572 1e5tA 710 3.12e+01 1qfmA b.69.7.1,c.69.1.4 27676,34644 1g5mA 166 3.19e+01 1maz f.1.4.1 60286 1gjhA 166 3.27e+01 1maz f.1.4.1 60575 1yswA 164 3.28e+01 1o6dA 163 3.28e+01 c.116.1.3 92567 1bct 69 3.44e+01 1bct j.35.1.1 46237 1cc1L 498 3.56e+01 1h2rL e.18.1.1 43301 2c1gA 431 3.63e+01 2c1iA 431 3.77e+01 1k3rA 268 3.77e+01 b.40.4.10,c.116.1.2 72018,72019 1u29A 129 3.81e+01 1rw7A 243 3.84e+01 c.23.16.2 97963 1k7yA 577 3.95e+01 a.46.1.1,c.23.6.1,d.173.1.1 68272,68273,68274 1ujpA 271 4.01e+01 c.1.2.4 99462 1qf5A 431 4.22e+01 1adeA c.37.1.10 32212 1kkbA 432 4.23e+01 c.37.1.10 72643 1d8cA 723 4.28e+01 1d8cA c.1.13.1 29325 1qvvA 237 4.29e+01 c.23.16.2 96442 1p7tA 731 4.36e+01 c.1.13.1 94319 2b8nA 429 4.53e+01 1cg4A 431 4.58e+01 1adeA c.37.1.10 32228 1puc 105 4.66e+01 1puc d.97.1.1 40675 1cg1A 431 4.70e+01 1adeA c.37.1.10 32223 1n0xL 215 4.82e+01 b.1.1.1,b.1.1.2 91532,91533 1ro2A 216 4.87e+01 d.264.1.2 97665 1jpc 109 4.98e+01 1b2pA b.78.1.1 27986 1qnrA 344 5.03e+01 1qnoA c.1.8.3 28834 1fpzA 212 5.13e+01 1fpzA c.45.1.1 59976 1t9hA 307 5.22e+01 1sceA 112 5.32e+01 1puc d.97.1.1 40676 1f9cA 372 5.35e+01 1mucA c.1.11.2,d.54.1.1 59728,59729 2fgeA 995 5.37e+01 1rniA 216 5.46e+01 d.264.1.2 97663 1rblI 109 5.54e+01 1rscI 111 5.70e+01 1izlC 473 5.87e+01 i.5.1.1 76996 1ot7A 229 6.10e+01 a.123.1.1 93505 1osvA 230 6.21e+01 a.123.1.1 93500 1nu9C 281 6.24e+01 a.8.6.1,a.8.6.1 92200,92201 1nu7D 282 6.29e+01 a.8.6.1,a.8.6.1 92191,92192 2f9lA 199 6.31e+01 3mucA 369 6.36e+01 1mucA c.1.11.2,d.54.1.1 29243,38887 1bkhA 369 6.40e+01 1mucA c.1.11.2,d.54.1.1 29238,38882 1mucA 373 6.53e+01 1mucA c.1.11.2,d.54.1.1 29236,38880 1m7xA 617 6.61e+01 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 1xdmA 365 6.68e+01 1vz2A 710 6.74e+01 b.69.7.1,c.69.1.4 108945,108946 2mucA 373 6.78e+01 1mucA c.1.11.2,d.54.1.1 29241,38885 1j2rA 199 6.80e+01 c.33.1.3 90788 1h2xA 710 6.85e+01 b.69.7.1,c.69.1.4 76598,76599 1e8nA 710 6.86e+01 1qfmA b.69.7.1,c.69.1.4 27675,34643 1vz3A 710 6.88e+01 b.69.7.1,c.69.1.4 108947,108948 1h2wA 710 6.88e+01 b.69.7.1,c.69.1.4 76596,76597 1xwdC 252 6.90e+01 1rlgA 119 6.91e+01 d.79.3.1 104981 1o6fA 710 6.95e+01 b.69.7.1,c.69.1.4 81085,81086 2ahxA 617 7.04e+01 1rm8A 169 7.06e+01 d.92.1.11 97660 1wb8A 210 7.35e+01 1s1iB 253 7.40e+01 i.1.1.1 105176 2a1dD 329 7.40e+01 1xrtA 467 7.55e+01 1v5pA 126 7.57e+01 b.55.1.1 108382 1cmoA 127 8.21e+01 1cmoA b.2.5.6 22462 1wb7A 210 8.22e+01 1nhyA 219 8.37e+01 a.45.1.1,c.47.1.5 80520,80521 2czwA 124 8.39e+01 1v2dA 381 8.57e+01 c.67.1.1 108281 1pxwA 128 8.58e+01 d.79.3.1 95305 1dcfA 136 8.63e+01 1dcfA c.23.1.2 31124 1v8kA 410 8.75e+01 c.37.1.9 100510 1eziA 228 8.92e+01 1eyrA c.68.1.13 34512 2c1hA 328 8.96e+01 1h4cA 201 8.98e+01 c.68.1.8 83481 1ottA 465 8.98e+01 f.20.1.1 87425