# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1x7oA 287 6.12e-26 1v2xA 194 1.56e-21 c.116.1.1 100274 1zjrA 211 6.26e-19 1mxiA 160 1.41e-14 c.116.1.1 79646 1o5zA 442 8.55e-02 c.59.1.2,c.72.2.2 92530,92531 1j8mF 297 1.01e-01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1vhyA 257 1.07e-01 b.122.1.2,c.116.1.5 100714,100715 2anuA 255 2.25e-01 1qwgA 251 2.57e-01 c.1.27.1 96473 1zxxA 319 2.77e-01 2dbqA 334 2.87e-01 1v6zA 228 2.90e-01 1h1yA 228 2.97e-01 c.1.2.2 76506 1xbiA 120 3.96e-01 1o6dA 163 4.16e-01 c.116.1.3 92567 1sdsA 117 4.96e-01 d.79.3.1 105439 1k3rA 268 5.61e-01 b.40.4.10,c.116.1.2 72018,72019 1xrtA 467 6.96e-01 1zjjA 263 7.69e-01 1vk3A 615 8.38e-01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1c30B 382 9.19e-01 c.8.3.1,c.23.16.1 30736,31413 2d8aA 348 9.67e-01 1w41A 101 9.80e-01 1x52A 124 1.18e+00 2d0iA 333 1.21e+00 1tzjA 338 1.29e+00 1ualA 274 1.31e+00 c.116.1.4 88383 1mjfA 281 1.44e+00 c.66.1.17 79198 1jztA 246 1.48e+00 c.104.1.1 63319 1a9xB 379 1.83e+00 1c3oB c.8.3.1,c.23.16.1 30732,31409 1j0hA 588 1.85e+00 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1u7pA 164 1.94e+00 1t9hA 307 2.39e+00 1rreA 200 2.47e+00 d.14.1.10 97791 2as0A 396 2.73e+00 1m65A 245 2.81e+00 c.6.3.1 84847 2b8nA 429 2.94e+00 2g8lA 299 2.98e+00 1uufA 369 3.08e+00 b.35.1.2,c.2.1.1 100006,100007 1tk9A 188 3.54e+00 c.80.1.3 107082 2fdrA 229 3.74e+00 1iirA 415 4.05e+00 1iirA c.87.1.5 62453 1v2dA 381 4.20e+00 c.67.1.1 108281 1vbuA 328 4.25e+00 8dfr 189 5.04e+00 1aoeA c.71.1.1 34895 1bgvA 449 5.09e+00 1k89 c.2.1.7,c.58.1.1 30217,33865 2aamA 309 5.48e+00 1bqcA 302 5.53e+00 1bqcA c.1.8.3 28831 2aifA 135 5.65e+00 1x1zA 252 6.15e+00 1jbwA 428 6.34e+00 c.59.1.2,c.72.2.2 62860,62861 1zrn 232 6.64e+00 1qq5A c.108.1.1 43323 1szqA 483 6.79e+00 e.44.1.1 99045 1cr1A 296 7.52e+00 1cr1A c.37.1.11 32286 1rdfA 267 7.57e+00 c.108.1.3 104884 1fp1D 372 7.71e+00 1fpqA a.4.5.29,c.66.1.12 59939,59940 2ghrA 302 8.08e+00 1qwnA 1045 8.35e+00 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 2fcr 173 8.92e+00 1rcf c.23.5.1 31151 2f9lA 199 8.93e+00 2a3nA 355 9.06e+00 1km4A 247 9.07e+00 c.1.2.3 72740 1ww8A 439 9.20e+00 1w4rA 195 9.27e+00 1wzcA 249 9.56e+00 1sviA 195 9.95e+00 c.37.1.8 106048 1x3lA 440 1.03e+01 2dpmA 284 1.05e+01 2dpmA c.66.1.28 34246 1vq2A 193 1.06e+01 1ozjA 144 1.06e+01 d.164.1.1 93846 2etvA 346 1.12e+01 1ockA 412 1.14e+01 c.117.1.1 86802 2fr1A 486 1.15e+01 1cl8A 276 1.17e+01 1ckqA c.52.1.1 33230 1tzzA 392 1.19e+01 1uu1A 335 1.20e+01 c.67.1.1 99993 1uc8A 280 1.20e+01 c.30.1.6,d.142.1.7 99165,99166 1s1pA 331 1.21e+01 c.1.7.1 98350 1ii5A 233 1.23e+01 c.94.1.1 62412 1qo2A 241 1.27e+01 1qo2A c.1.2.1 28533 1jbeA 128 1.28e+01 3chy c.23.1.1 62845 5nul 138 1.30e+01 5nul c.23.5.1 31191 1ns5A 155 1.30e+01 c.116.1.3 80705 2b0aA 186 1.30e+01 1xk7A 408 1.31e+01 1w0mA 226 1.31e+01 c.1.1.1 109027 7taa 478 1.32e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1ymqA 261 1.34e+01 1ht6A 405 1.35e+01 b.71.1.1,c.1.8.1 83629,83630 1l7mA 211 1.43e+01 c.108.1.4 73664 1l6wA 220 1.45e+01 c.1.10.1 73632 1gox 370 1.45e+01 1gox c.1.4.1 28607 1im5A 180 1.45e+01 c.33.1.3 66211 1hd2A 161 1.46e+01 c.47.1.10 60962 1pa1A 310 1.51e+01 c.45.1.2 94404 1nuyA 337 1.51e+01 e.7.1.1 86213 1yqdA 366 1.52e+01 1knyA 253 1.55e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 1zu4A 320 1.62e+01 1oflA 481 1.63e+01 b.80.1.4 103934 1ys4A 354 1.66e+01 1z41A 338 1.67e+01 1sqgA 429 1.69e+01 a.79.1.3,c.66.1.38 105912,105913 1us0A 316 1.70e+01 c.1.7.1 99850 1o4sA 389 1.70e+01 c.67.1.1 86620 1inlA 296 1.71e+01 c.66.1.17 66220 1u8vA 490 1.77e+01 1duvG 333 1.83e+01 1othA c.78.1.1,c.78.1.1 35228,35229 1rybA 212 1.85e+01 c.56.3.1 98098 1dmgA 225 1.89e+01 1dmgA c.22.1.1 31036 1othA 321 1.96e+01 1othA c.78.1.1,c.78.1.1 35260,35261 1u4nA 310 1.97e+01 1z85A 234 1.97e+01 1pn2A 280 2.01e+01 d.38.1.4,d.38.1.4 94930,94931 1swvA 267 2.07e+01 1i60A 278 2.09e+01 c.1.15.4 71118 1n8jA 186 2.18e+01 c.47.1.10 85401 1g6hA 257 2.25e+01 1gajA c.37.1.12 60318 1dmuA 299 2.37e+01 1dmuA c.52.1.4 33294 1j0dA 341 2.37e+01 c.79.1.1 83902 1rqjA 299 2.39e+01 a.128.1.1 97744 1pieA 419 2.41e+01 d.14.1.5,d.58.26.7 94706,94707 1txnA 328 2.42e+01 1wh5A 80 2.42e+01 1o20A 427 2.48e+01 c.82.1.1 86556 2fywA 267 2.51e+01 1yfsA 465 2.53e+01 2amxA 376 2.53e+01 1zemA 262 2.55e+01 1nnlA 225 2.58e+01 c.108.1.4 85906 1mi3A 322 2.63e+01 c.1.7.1 91274 1vzwA 244 2.66e+01 1wdiA 345 2.75e+01 1kmvA 186 2.77e+01 c.71.1.1 72757 1vlmA 219 2.78e+01 c.66.1.41 108836 1yxyA 234 2.89e+01 2b0cA 206 2.91e+01 1pv5A 264 2.92e+01 d.251.1.1 95150 1ad2 228 2.92e+01 1ad2 e.24.1.1 43353 1brwA 433 2.93e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1ig3A 263 2.98e+01 1ig3A b.82.6.1,c.100.1.1 62358,62359 1vr6A 350 3.02e+01 2aegA 268 3.03e+01 1vhoA 346 3.06e+01 b.49.3.1,c.56.5.4 100694,100695 1zwzA 126 3.08e+01 1pe1A 267 3.09e+01 c.1.10.4 94591 1dyr 206 3.11e+01 1aoeA c.71.1.1 34916 1nhs 447 3.15e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1b06A 210 3.18e+01 1avmA a.2.11.1,d.44.1.1 15740,38737 1n82A 331 3.18e+01 c.1.8.3 91703 2cw6A 298 3.20e+01 1e5dA 402 3.24e+01 1e5dA c.23.5.1,d.157.1.3 31208,42061 1o08A 221 3.24e+01 c.108.1.6 86525 1a53 247 3.31e+01 1a53 c.1.2.4 28564 1eceA 358 3.37e+01 1eceA c.1.8.3 28813 1l5xA 280 3.40e+01 c.106.1.1 77718 2bw0A 329 3.47e+01 7a3hA 303 3.50e+01 7a3hA c.1.8.3 28817 1te2A 226 3.52e+01 c.108.1.6 106792 1xfiA 367 3.52e+01 e.50.1.1 109584 2f6uA 234 3.56e+01 1g3qA 237 3.61e+01 1hyqA c.37.1.10 60237 1zhaA 267 3.65e+01 2f71A 298 3.67e+01 1l1qA 186 3.69e+01 c.61.1.1 77653 1yz1A 174 3.70e+01 1pb1A 416 3.70e+01 c.77.1.1 88014 1cjxA 357 3.73e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1umgA 362 3.73e+01 d.280.1.1 107956 1ro0A 216 3.74e+01 d.264.1.2 97664 1ytlA 174 3.75e+01 1m3sA 186 3.76e+01 c.80.1.3 78573 1ek6A 348 3.80e+01 1xel c.2.1.2 29800 1m7vA 363 3.85e+01 d.174.1.1 78748 1w8sA 263 3.86e+01 1eziA 228 3.86e+01 1eyrA c.68.1.13 34512 1zdzA 302 3.96e+01 1g66A 207 3.99e+01 1bs9 c.69.1.30 31329 1mx3A 347 4.01e+01 c.2.1.4,c.23.12.1 79638,79639 1c7nA 399 4.03e+01 1d2fA c.67.1.3 34413 1jpzA 473 4.04e+01 a.104.1.1 67069 1lk9A 448 4.04e+01 c.67.1.1 78057 1lbvA 252 4.04e+01 e.7.1.1 73813 2bkaA 242 4.07e+01 1m3uA 264 4.08e+01 c.1.12.8 84784 1eluA 390 4.10e+01 1elqA c.67.1.3 34434 1hdoA 206 4.14e+01 1he2A c.2.1.2 60965 2db3A 434 4.14e+01 1wwkA 307 4.15e+01 2b49A 287 4.17e+01 1yiiA 320 4.19e+01 2gptA 523 4.27e+01 1ro2A 216 4.35e+01 d.264.1.2 97665 1rkd 309 4.41e+01 1rkd c.72.1.1 34928 1bn8A 420 4.43e+01 1pcl b.80.1.1 28022 1pswA 348 4.44e+01 c.87.1.7 88287 1efpB 252 4.45e+01 1efvB c.26.2.3 31636 2bogX 286 4.45e+01 1eg2A 319 4.48e+01 1eg2A c.66.1.11 34249 1dbiA 280 4.49e+01 1gci c.41.1.1 32543 2h03A 291 4.49e+01 1ikpA 613 4.50e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1ur1A 378 4.52e+01 c.1.8.3 99804 1j4aA 333 4.57e+01 c.2.1.4,c.23.12.1 71502,71503 2aiqA 231 4.58e+01 1tqjA 230 4.59e+01 c.1.2.2 107228 2c12A 439 4.61e+01 1st9A 143 4.73e+01 c.47.1.10 98987 1k77A 260 4.73e+01 c.1.15.5 72096 1byi 224 4.88e+01 1byi c.37.1.10 32199 1kaeA 434 4.94e+01 c.82.1.2 72247 1kwgA 645 4.95e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1vddA 228 4.98e+01 e.49.1.1 108519 1wraA 308 4.99e+01 2jdxA 385 4.99e+01 1jdw d.126.1.2 41139 1ltqA 301 5.03e+01 c.108.1.9,c.37.1.1 78208,78209 2blnA 305 5.09e+01 1t4bA 367 5.09e+01 c.2.1.3,d.81.1.1 106406,106407 2bgsA 344 5.14e+01 1o7fA 469 5.15e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2ga9A 297 5.20e+01 2f9fA 177 5.24e+01 1q8iA 783 5.27e+01 c.55.3.5,e.8.1.1 96208,96209 1f6yA 262 5.29e+01 1f6yA c.1.21.2 29673 1ispA 181 5.30e+01 c.69.1.18 76778 1wzlA 585 5.41e+01 1g38A 393 5.44e+01 2admA c.66.1.27 60235 2gk3A 256 5.45e+01 1e9rA 437 5.48e+01 c.37.1.11 64827 1z7gA 217 5.50e+01 1xyzA 347 5.51e+01 1taxA c.1.8.3 28804 2g8mA 264 5.52e+01 1b0uA 262 5.54e+01 1b0uA c.37.1.12 32370 1m1nA 491 5.55e+01 c.92.2.3 78417 1twdA 256 5.55e+01 c.1.30.1 107397 1txuA 273 5.58e+01 a.222.1.1 107439 2fi1A 190 5.58e+01 2gyqA 175 5.60e+01 2aeeA 211 5.60e+01 1nbwA 607 5.65e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1z5yE 149 5.66e+01 1d4oA 184 5.70e+01 1d4oA c.31.1.4 31748 2fv7A 331 5.78e+01 1yirA 408 5.81e+01 2b8eA 273 5.85e+01 1yb5A 351 5.89e+01 1ohfA 644 5.90e+01 b.121.4.8 93014 1reqA 727 5.96e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 1yrtA 364 5.99e+01 1gpmA 525 6.08e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1xdwA 331 6.12e+01 1nf9A 207 6.14e+01 c.33.1.3 85631 1va0A 239 6.15e+01 1gk8I 140 6.15e+01 d.73.1.1 65242 2hc1A 291 6.17e+01 1gk9A 260 6.20e+01 d.153.1.2 65246 1eokA 290 6.27e+01 1eokA c.1.8.5 28991 1afwA 393 6.33e+01 1afwA c.95.1.1,c.95.1.1 35900,35901 1v73A 342 6.41e+01 1h16A 759 6.52e+01 c.7.1.1 76462 2ebn 289 6.54e+01 2ebn c.1.8.5 28990 1zj8A 566 6.63e+01 1pl8A 356 6.69e+01 b.35.1.2,c.2.1.1 94878,94879 1e7uA 961 6.73e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 2c4nA 250 6.74e+01 1sffA 426 6.77e+01 c.67.1.4 105482 1fthA 122 6.77e+01 d.150.1.2 60028 1qnrA 344 6.83e+01 1qnoA c.1.8.3 28834 1cnv 299 6.97e+01 1cnv c.1.8.5 28989 1hdcA 253 7.03e+01 1e6wA c.2.1.2 29862 1p4kA 295 7.06e+01 d.153.1.5 87772 2tpt 440 7.09e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17759,31623,38621 1o0xA 262 7.09e+01 d.127.1.1 80755 1nrwA 288 7.14e+01 c.108.1.10 86128 1tp9A 162 7.16e+01 1r85A 379 7.19e+01 c.1.8.3 104839 3dfr 162 7.27e+01 3dfr c.71.1.1 34880 2f7fA 494 7.36e+01 1s0aA 429 7.37e+01 c.67.1.4 98263 2gfhA 260 7.47e+01 2c6cA 707 7.50e+01 1d2mA 665 7.51e+01 1d2mA c.37.1.19,c.37.1.19 32417,32418 1n3lA 372 7.51e+01 c.26.1.1 79966 1gnuA 117 7.53e+01 d.15.1.3 65403 1kblA 873 7.54e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1vpt 348 7.57e+01 3mag c.66.1.25 34207 1i6pA 220 7.62e+01 1ddzA c.53.2.1 61848 1v3vA 333 7.65e+01 b.35.1.2,c.2.1.1 108345,108346 1atlA 202 7.65e+01 1atlA d.92.1.9 40322 1xzoA 174 7.67e+01 2fliA 220 7.68e+01 2ceyA 306 7.69e+01 1vmeA 410 7.77e+01 c.23.5.1,d.157.1.3 108893,108894 1xocA 520 7.77e+01 1j2rA 199 7.78e+01 c.33.1.3 90788 2g03A 194 7.79e+01 1qqqA 264 7.80e+01 1bkpA d.117.1.1 40931 1geqA 248 7.92e+01 2tysA c.1.2.4 28589 1euhA 475 7.92e+01 1euhA c.82.1.1 35369 1v77A 212 7.95e+01 c.6.3.2 108402 1qe5A 266 8.04e+01 1b8oA c.56.2.1 33784 1dkuA 317 8.07e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1ag9A 175 8.08e+01 1rcf c.23.5.1 31178 1k1eA 180 8.10e+01 c.108.1.5 67995 1tz9A 367 8.14e+01 c.1.15.6 107466 2bmaA 470 8.16e+01 1ef8A 261 8.21e+01 1ef8A c.14.1.3 30921 1frb 315 8.22e+01 1frb c.1.7.1 28665 1yt5A 258 8.23e+01 1khdA 345 8.24e+01 a.46.2.1,c.27.1.1 77400,77401 2ex4A 241 8.41e+01 2g2cA 167 8.47e+01 2g8oA 264 8.56e+01 2f8mA 244 8.65e+01 1ooeA 236 8.70e+01 c.2.1.2 87196 1f28A 297 8.73e+01 1bkpA d.117.1.1 59608 1deuA 277 8.74e+01 1theB d.3.1.1 37085 2bzgA 232 8.81e+01 2c1iA 431 8.83e+01 2d28C 149 8.83e+01 1eq9A 222 8.85e+01 5ptp b.47.1.2 26068 1pmmA 466 8.87e+01 c.67.1.6 94901 1w6kA 732 8.88e+01 1rhs 296 8.88e+01 1rhs c.46.1.2,c.46.1.2 32703,32704 1fmtA 314 8.93e+01 1fmtA b.46.1.1,c.65.1.1 25758,34174