% SAM: /projects/compbio/bin/i686/hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53 % (c) 1992-2001 Regents of the University of California, Santa Cruz % % Sequence Alignment and Modeling Software System % http://www.cse.ucsc.edu/research/compbio/sam.html % % ----------------- Citations (SAM, SAM-T2K, HMMs) -------------------- % R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: % Extension and analysis of the basic method, CABIOS 12:95-107, 1996. % K. Karplus, et al., What is the value added by human intervention in protein % structure prediction, Proteins: Stucture, Function, Genetics 45(S5):86--91, 2001. % A. Krogh et al., Hidden Markov models in computational biology: % Applications to protein modeling, JMB 235:1501-1531, Feb 1994. % --------------------------------------------------------------------- % T0378.t04-100-40-40-str2+CB_burial_14_7 Host: lopez.cse.ucsc.edu Fri Jul 14 12:40:39 2006 % karplus Dir: /projects/compbio/experiments/protein-predict/casp7/T0378 % --------------------------------------------------------------------- % Inserted Files: % Database Files: /projects/compbio/experiments/models.97/indexes/t04.x-seqs,/projects/compbio/experiments/models.97/indexes/t04.str2s,/projects/compbio/experiments/models.97/indexes/t04.CB-burial-14-7s % MODLIBMOD T0378.t04-100-40-40-str2+CB_burial_14_7 T0378.t04-100-40-40-str2+CB_burial_14_7 model number 1 % Calibration data for 11062 database sequences % 3449 of 11062 scores > calibrate_threshold (0) used. trackmod T0378.t04.w0.5.mod,T0378.t04.str2.mod,T0378.t04.CB_burial_14_7.mod trackcoeff 1.0,0.4,0.4 alphabet protein,STR2,CB_BURIAL_14_7 lambda 0.839808 tau 0.765710 sw 2 dpstyle 0 jumpinprob 1.000000 jumpoutprob 1.000000 subtractnull 4 FIMmethodscore -6 insertmethodscore 0 adjust_score 2 ENDMODLIBMOD