# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zpwX 90 6.05e-13 1uw1A 80 1.71e-01 k.42.1.1 100069 1t8qA 336 2.33e-01 c.1.18.3 106669 1ydyA 356 4.08e-01 1gyxA 76 7.15e-01 d.80.1.1 76387 1vgjA 184 9.38e-01 1oz9A 150 1.18e+00 d.92.1.15 93808 1vdxA 184 1.33e+00 1fmcA 255 1.81e+00 1cydA c.2.1.2 29856 1yqgA 263 3.42e+00 1sr9A 644 3.73e+00 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1dptA 117 4.05e+00 1dptA d.80.1.3 39862 1gd0A 122 4.21e+00 1dptA d.80.1.3 39834 1mfiA 114 4.28e+00 1dptA d.80.1.3 39856 1d3uA 181 4.29e+00 1ytbA d.129.1.1,d.129.1.1 41290,41291 1aisA 182 4.69e+00 1ytbA d.129.1.1,d.129.1.1 41288,41289 1m7bA 184 5.65e+00 c.37.1.8 74572 1ta9A 450 6.88e+00 1otfA 62 7.92e+00 1otfA d.80.1.1 39820 1gifA 115 9.29e+00 1dptA d.80.1.3 39837 1z08A 170 1.13e+01 1pczA 191 1.16e+01 1ytbA d.129.1.1,d.129.1.1 41292,41293 2aexA 346 1.21e+01 1edoA 244 1.38e+01 1ybvA c.2.1.2 29896 1e79D 482 1.42e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 1h8eD 482 1.52e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 2ck3D 482 1.58e+01 1vb3A 428 1.58e+01 1dtgA 334 1.61e+01 1nnt c.94.1.2 35896 1ryoA 327 1.73e+01 c.94.1.2 98108 3rabA 169 1.75e+01 1ctqA c.37.1.8 32018 1gtxA 472 1.77e+01 1gtxA 1hfoA 113 1.94e+01 d.80.1.3 61006 1ycrA 109 2.05e+01 1ycqA a.42.1.1 17420 1w1oA 534 2.08e+01 d.58.32.4,d.145.1.1 109071,109072 1z3eA 132 2.14e+01 1tfr 305 2.18e+01 1tfr a.60.7.1,c.120.1.2 18081,33351 1iruK 201 2.20e+01 d.153.1.4 71362 1jqfA 334 2.21e+01 c.94.1.2 67086 1b3eA 330 2.23e+01 1nnt c.94.1.2 35897 2axiA 115 2.36e+01 1a8e 329 2.51e+01 1cb6A c.94.1.2 35888 1nwbA 124 2.58e+01 b.124.1.1 86296 1z0jA 170 2.58e+01 1t4fM 110 2.59e+01 1ohvA 472 2.59e+01 c.67.1.4 93031 2ae2A 260 2.61e+01 1bdb c.2.1.2 29945 1vhoA 346 2.68e+01 b.49.3.1,c.56.5.4 100694,100695 1wzcA 249 2.69e+01 1sqgA 429 2.78e+01 a.79.1.3,c.66.1.38 105912,105913 1oaoC 729 2.92e+01 e.26.1.3 86746 1mjgM 729 3.02e+01 e.26.1.3 79204 1t6nA 220 3.29e+01 c.37.1.19 106576 1m7vA 363 3.30e+01 d.174.1.1 78748 1seiA 130 3.33e+01 1seiA d.140.1.1 41463 1s0yB 71 3.35e+01 d.80.1.1 98315 1eypA 222 3.35e+01 1eypA d.36.1.1 38536 1d3kA 329 3.45e+01 1nnt c.94.1.2 35889 2b9eA 303 3.46e+01 1i19A 561 3.54e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1jepA 222 3.60e+01 d.36.1.1 66612 1mwwA 128 3.67e+01 d.80.1.4 91483 2cx1A 187 3.90e+01 1qysA 106 4.03e+01 k.41.1.1 96603 2bmeA 186 4.05e+01 1kpgA 287 4.17e+01 c.66.1.18 68735 1jflA 228 4.34e+01 c.78.2.1,c.78.2.1 71656,71657 1eyqA 222 4.37e+01 1eypA d.36.1.1 38534 1uarA 285 4.37e+01 c.46.1.2,c.46.1.2 107762,107763 1zlmA 58 4.43e+01 1cx4A 305 4.50e+01 b.82.3.2,b.82.3.2 59099,59100 9gafA 295 4.59e+01 1apyA d.153.1.5 42008 1aw2A 256 4.59e+01 1amk c.1.1.1 28523 1aw1A 256 4.63e+01 1amk c.1.1.1 28515 1lyxA 248 4.65e+01 c.1.1.1 78304 1d5cA 162 4.67e+01 1ctqA c.37.1.8 32021 2breA 219 4.87e+01 1kp9B 287 4.90e+01 c.66.1.18 68734 1fyvA 161 4.92e+01 1fyvA c.23.2.1 31127 1t6lA 290 4.93e+01 d.131.1.2,d.131.1.2 106574,106575 1skyE 473 4.96e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 18314,26479,32359 1yb2A 275 4.98e+01 1b1xA 689 4.99e+01 1cb6A c.94.1.2,c.94.1.2 35865,35866 2e2c 156 5.05e+01 1u9aA d.20.1.1 38336 1nv8A 284 5.10e+01 c.66.1.30 86224 1han 297 5.20e+01 1han d.32.1.3,d.32.1.3 38506,38507 1x2kA 68 5.22e+01 1udg 244 5.23e+01 3eugA c.18.1.1 31016 1l1eA 287 5.28e+01 c.66.1.18 73454 1huqA 164 5.29e+01 1byuA c.37.1.8 32020 1oasA 322 5.30e+01 1oasA c.79.1.1 35293 1am1 213 5.33e+01 1yer d.122.1.1 41095 1lgtA 297 5.36e+01 d.32.1.3,d.32.1.3 77956,77957 1lkdA 297 5.38e+01 d.32.1.3,d.32.1.3 78059,78060 1o5xA 248 5.42e+01 c.1.1.1 92528 1udh 244 5.49e+01 3eugA c.18.1.1 31015 1lct 333 5.59e+01 1cb6A c.94.1.2 35836 1zdnA 158 5.63e+01 1ekeA 230 5.67e+01 1ekeA c.55.3.1 33572 5ukdA 194 5.68e+01 1zin c.37.1.1 31851 1zs7A 190 5.75e+01 1f00I 282 5.79e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1mpxA 615 5.81e+01 b.18.1.13,c.69.1.21 85041,85042 1jh6A 189 5.96e+01 d.61.1.1 66707 1bvsB 203 6.09e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16281,17956,25275 2dbsA 90 6.09e+01 1regX 122 6.14e+01 1regX d.58.27.1 39406 1vl4A 447 6.20e+01 d.283.1.1 108718 1fcjA 322 6.31e+01 1oasA c.79.1.1 35289 1p4kA 295 6.39e+01 d.153.1.5 87772 1b0lA 691 6.48e+01 1cb6A c.94.1.2,c.94.1.2 35847,35848 1iyxA 432 6.54e+01 c.1.11.1,d.54.1.1 83815,83816 1fsiA 189 6.71e+01 1fsiA d.61.1.1 39536 1ae1A 273 6.73e+01 1bdb c.2.1.2 29943 1nz0A 118 6.81e+01 d.14.1.2 86433 1ixkA 315 6.90e+01 c.66.1.38 90716 1div 149 6.93e+01 1div d.99.1.1,d.100.1.1 40692,40693 1f2dA 341 6.95e+01 1f2dA c.79.1.1 35298 1aipC 196 7.04e+01 1tfe a.5.2.2,d.43.1.1 58930,58931 1v7rA 186 7.08e+01 c.51.4.1 100482 2brcA 214 7.11e+01 1kq3A 376 7.13e+01 e.22.1.2 68790 1h4vB 421 7.26e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1j0dA 341 7.29e+01 c.79.1.1 83902 1td5A 202 7.30e+01 d.110.2.2 106767 1amw 214 7.69e+01 1yer d.122.1.1 41093 1gz2A 142 7.73e+01 d.169.1.1 83392 1m5wA 243 7.98e+01 c.1.24.1 84836 1y1xA 191 8.09e+01 1v5iB 76 8.11e+01 1adjA 421 8.12e+01 1adjA c.51.1.1,d.104.1.1 33188,40737 2c07A 285 8.13e+01 1dt9A 437 8.14e+01 1dt9A c.55.4.2,d.79.3.2,d.91.1.1 33738,39815,40257 1qf9A 194 8.19e+01 1zin c.37.1.1 31848 1qd9A 124 8.44e+01 1qu9A d.79.1.1 39758 1ho1A 242 8.52e+01 1ho1A c.1.24.1 61097 7timA 247 8.56e+01 1amk c.1.1.1 28457 1i7kA 179 8.70e+01 1u9aA d.20.1.1 61889 1cfpA 92 8.70e+01 1b4cA a.39.1.2 17172 1r2qA 170 8.77e+01 c.37.1.8 96874 1jbiA 100 8.92e+01 d.209.1.1 66481 1vllA 334 8.95e+01 c.2.1.13 108834 1itpA 77 8.97e+01 d.58.3.2 66371 2bgcA 238 8.97e+01