# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zpwX 90 7.37e-13 1uw1A 80 1.41e-01 k.42.1.1 100069 1ydyA 356 3.22e-01 1t8qA 336 4.53e-01 c.1.18.3 106669 1oz9A 150 4.61e-01 d.92.1.15 93808 1gyxA 76 1.14e+00 d.80.1.1 76387 1vdxA 184 1.49e+00 1vgjA 184 1.77e+00 1fmcA 255 1.84e+00 1cydA c.2.1.2 29856 1ta9A 450 2.29e+00 1sr9A 644 2.89e+00 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 2ck3D 482 4.53e+00 1h8eD 482 5.21e+00 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1e79D 482 5.29e+00 1skyE a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 1m7bA 184 5.42e+00 c.37.1.8 74572 1ugjA 141 6.62e+00 b.41.1.3 107826 1cx4A 305 7.57e+00 b.82.3.2,b.82.3.2 59099,59100 1txuA 273 7.58e+00 a.222.1.1 107439 2a5dA 175 8.77e+00 1hv8A 367 9.15e+00 1hv8A c.37.1.19,c.37.1.19 32405,32406 1aisA 182 9.30e+00 1ytbA d.129.1.1,d.129.1.1 41288,41289 1z08A 170 9.56e+00 2bmeA 186 1.07e+01 1vllA 334 1.16e+01 c.2.1.13 108834 1iruK 201 1.26e+01 d.153.1.4 71362 1d3uA 181 1.26e+01 1ytbA d.129.1.1,d.129.1.1 41290,41291 2ae2A 260 1.28e+01 1bdb c.2.1.2 29945 1omoA 322 1.30e+01 c.2.1.13 104017 1m5wA 243 1.45e+01 c.1.24.1 84836 2bgkA 278 1.58e+01 1rypJ 204 1.62e+01 d.153.1.4 41878 1z3eA 132 1.64e+01 1gd0A 122 1.68e+01 1dptA d.80.1.3 39834 1w1oA 534 1.74e+01 d.58.32.4,d.145.1.1 109071,109072 1ho1A 242 1.76e+01 1ho1A c.1.24.1 61097 1mfiA 114 1.78e+01 1dptA d.80.1.3 39856 1tfr 305 1.79e+01 1tfr a.60.7.1,c.120.1.2 18081,33351 1g0uI 205 1.82e+01 d.153.1.4 41891 1zs7A 190 1.86e+01 1wzcA 249 1.88e+01 2cx1A 187 1.95e+01 1kq3A 376 2.08e+01 e.22.1.2 68790 2e2c 156 2.18e+01 1u9aA d.20.1.1 38336 1dptA 117 2.18e+01 1dptA d.80.1.3 39862 1pczA 191 2.18e+01 1ytbA d.129.1.1,d.129.1.1 41292,41293 1xv5A 401 2.25e+01 1gifA 115 2.32e+01 1dptA d.80.1.3 39837 1dmgA 225 2.42e+01 1dmgA c.22.1.1 31036 1lgtA 297 2.51e+01 d.32.1.3,d.32.1.3 77956,77957 1ycrA 109 2.52e+01 1ycqA a.42.1.1 17420 2b9eA 303 2.52e+01 1han 297 2.53e+01 1han d.32.1.3,d.32.1.3 38506,38507 1lkdA 297 2.53e+01 d.32.1.3,d.32.1.3 78059,78060 1mo2A 294 2.56e+01 c.69.1.22 79331 1r2qA 170 2.59e+01 c.37.1.8 96874 1n6hA 170 2.59e+01 c.37.1.8 80197 1uslA 170 2.65e+01 c.121.1.1 99871 1ohvA 472 2.89e+01 c.67.1.4 93031 1fukA 165 3.05e+01 1fukA c.37.1.19 32409 1rypI 222 3.09e+01 d.153.1.4 41877 1d5cA 162 3.16e+01 1ctqA c.37.1.8 32021 1iv8A 720 3.29e+01 b.71.1.1,c.1.8.1 76842,76843 1huqA 164 3.44e+01 1byuA c.37.1.8 32020 1z0jA 170 3.58e+01 1sqgA 429 3.63e+01 a.79.1.3,c.66.1.38 105912,105913 3rabA 169 3.64e+01 1ctqA c.37.1.8 32018 1v5iB 76 3.65e+01 1edoA 244 3.65e+01 1ybvA c.2.1.2 29896 1b0lA 691 3.69e+01 1cb6A c.94.1.2,c.94.1.2 35847,35848 2f15A 96 3.76e+01 1ockA 412 3.81e+01 c.117.1.1 86802 1gz2A 142 3.81e+01 d.169.1.1 83392 1z5yE 149 3.95e+01 2axiA 115 4.01e+01 1f2dA 341 4.04e+01 1f2dA c.79.1.1 35298 1r8sA 164 4.08e+01 c.37.1.8 97247 1t4fM 110 4.09e+01 5ukdA 194 4.10e+01 1zin c.37.1.1 31851 1uujA 88 4.21e+01 a.221.1.1 108046 1lct 333 4.21e+01 1cb6A c.94.1.2 35836 1qysA 106 4.26e+01 k.41.1.1 96603 1qu9A 128 4.39e+01 1qu9A d.79.1.1 39755 1qu9C 128 4.39e+01 1qu9A d.79.1.1 39757 1bvsB 203 4.54e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16281,17956,25275 1r5qA 102 4.56e+01 a.186.1.1 97103 1jflA 228 4.57e+01 c.78.2.1,c.78.2.1 71656,71657 1qf9A 194 4.58e+01 1zin c.37.1.1 31848 1zdnA 158 4.63e+01 1td5A 202 4.68e+01 d.110.2.2 106767 1qd9A 124 4.70e+01 1qu9A d.79.1.1 39758 2a5yB 549 4.73e+01 2afcA 168 4.84e+01 1itpA 77 4.86e+01 d.58.3.2 66371 2be4A 272 4.86e+01 1v72A 356 4.86e+01 1eypA 222 4.88e+01 1eypA d.36.1.1 38536 1jepA 222 4.89e+01 d.36.1.1 66612 1wvqA 167 4.90e+01 1aipC 196 5.03e+01 1tfe a.5.2.2,d.43.1.1 58930,58931 1i19A 561 5.04e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1eyqA 222 5.11e+01 1eypA d.36.1.1 38534 1b1xA 689 5.13e+01 1cb6A c.94.1.2,c.94.1.2 35865,35866 1cczA 171 5.13e+01 1cczA b.1.1.1,b.1.1.3 19758,21683 1nz0A 118 5.40e+01 d.14.1.2 86433 1hfoA 113 5.45e+01 d.80.1.3 61006 1ae1A 273 5.45e+01 1bdb c.2.1.2 29943 1x2kA 68 5.47e+01 1zlmA 58 5.58e+01 1asu 162 5.59e+01 1cxqA c.55.3.2 33626 2gdqA 382 5.63e+01 1dfmA 223 5.63e+01 1d2iA c.52.1.5 33295 1vl4A 447 5.67e+01 d.283.1.1 108718 1jh6A 189 5.84e+01 d.61.1.1 66707 2aexA 346 5.87e+01 1q9uA 130 5.91e+01 d.129.7.1 96314 1j90A 230 5.92e+01 c.37.1.1 66448 1jffA 451 5.98e+01 c.32.1.1,d.79.2.1 62932,62933 1ughI 82 6.04e+01 1ugiA d.17.5.1 38133 1apa 266 6.06e+01 1qi7A d.165.1.1 42205 1vb3A 428 6.16e+01 1q8bA 105 6.22e+01 d.58.4.6 96201 1ekeA 230 6.33e+01 1ekeA c.55.3.1 33572 1vhoA 346 6.34e+01 b.49.3.1,c.56.5.4 100694,100695 1gtxA 472 6.37e+01 1gtxA 1j0dA 341 6.44e+01 c.79.1.1 83902 1tvkA 440 6.45e+01 c.32.1.1,d.79.2.1 107362,107363 1n0wA 243 6.46e+01 c.37.1.11 79772 1regX 122 6.49e+01 1regX d.58.27.1 39406 1914 232 6.62e+01 1914 d.49.1.1,d.49.1.1 83028,83029 1v7zA 260 6.64e+01 c.125.1.1 100488 1i7kA 179 6.70e+01 1u9aA d.20.1.1 61889 1vclA 432 6.72e+01 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1uarA 285 6.81e+01 c.46.1.2,c.46.1.2 107762,107763 1cb6A 691 6.95e+01 1cb6A c.94.1.2,c.94.1.2 35840,35841 2g9iA 249 6.96e+01 2breA 219 7.03e+01 1cxqA 162 7.10e+01 1cxqA c.55.3.2 33621 1yqgA 263 7.10e+01 1vmeA 410 7.17e+01 c.23.5.1,d.157.1.3 108893,108894 1seiA 130 7.19e+01 1seiA d.140.1.1 41463 1fcjA 322 7.25e+01 1oasA c.79.1.1 35289 1t6lA 290 7.26e+01 d.131.1.2,d.131.1.2 106574,106575 1jbiA 100 7.32e+01 d.209.1.1 66481 1lcf 691 7.50e+01 1cb6A c.94.1.2,c.94.1.2 35838,35839 1o3yA 166 7.61e+01 c.37.1.8 86618 1zm7A 230 7.63e+01 1oe0A 230 7.67e+01 c.37.1.1 92788 1mpxA 615 7.85e+01 b.18.1.13,c.69.1.21 85041,85042 1vm6A 228 7.87e+01 c.2.1.3,d.81.1.3 108876,108877 2fafA 608 7.93e+01 1e8aA 91 7.98e+01 1b4cA a.39.1.2 17188 1jl3A 139 7.99e+01 c.44.1.1 66826 1otfA 62 8.01e+01 1otfA d.80.1.1 39820 1y1xA 191 8.03e+01 1smbA 154 8.06e+01 d.111.1.1 105756 1gvdA 52 8.12e+01 a.4.1.3 83338 1hxhA 253 8.37e+01 c.2.1.2 76725 1ukvY 206 8.38e+01 c.37.1.8 107918 2bcgY 206 8.38e+01 1j3kA 280 8.43e+01 c.71.1.1 84070 1mwwA 128 8.47e+01 d.80.1.4 91483 1a5v 162 8.51e+01 1cxqA c.55.3.2 33629 2scuB 388 8.56e+01 2scuB c.23.4.1,d.142.1.4 31141,41562 1nbwB 117 8.56e+01 c.51.3.2 80396 1tu5A 746 8.67e+01 1fsiA 189 8.69e+01 1fsiA d.61.1.1 39536 2gqrA 237 8.81e+01 1b4qA 105 8.83e+01 1kte c.47.1.1 32773 1l0qA 391 8.90e+01 b.1.3.1,b.69.2.3 77644,77645 1oasA 322 8.91e+01 1oasA c.79.1.1 35293 1kafA 108 8.97e+01 d.199.1.1 68372