Best Alignments for T0377

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1zpwX/T0377-1zpwX-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zpwX/T0377-1zpwX-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.1255e-122.49e-38
2ivyA/T0377-2ivyA-t06-global-adpstyle1.a2m 2ivyA/T0377-2ivyA-t06-global-adpstyle1.al 5.9003e-084.43e-29
1vgjA/T0377-1vgjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vgjA/T0377-1vgjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.8853e-011.07e-13
1oz9A/T0377-1oz9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1oz9A/T0377-1oz9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9770e+008.59e-08 d.92.1.15
1uw1A/T0377-1uw1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1uw1A/T0377-1uw1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3828e+003.25e-06 k.42.1.1
1fmcA/T0377-1fmcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fmcA/T0377-1fmcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.8623e+001.39e-09 1cydA c.2.1.2
1m7bA/T0377-1m7bA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1m7bA/T0377-1m7bA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1696e+001.92e-06 c.37.1.8
1ta9A/T0377-1ta9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ta9A/T0377-1ta9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.8389e+008.10e-13
1ydyA/T0377-1ydyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ydyA/T0377-1ydyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.4565e+002.52e+02
1lkdA/T0377-1lkdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1lkdA/T0377-1lkdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.8917e+003.82e-12 d.32.1.3
d.32.1.3

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001