# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zpwX 90 8.18e-10 1mngA 203 1.88e+00 1avmA a.2.11.1,d.44.1.1 15776,38701 1vl4A 447 2.58e+00 d.283.1.1 108718 1qysA 106 2.62e+00 k.41.1.1 96603 1omoA 322 2.67e+00 c.2.1.13 104017 1vgjA 184 2.71e+00 1uw1A 80 2.83e+00 k.42.1.1 100069 1oz9A 150 3.65e+00 d.92.1.15 93808 1wr2A 238 4.25e+00 1ta9A 450 5.29e+00 1pl4A 198 5.39e+00 a.2.11.1,d.44.1.1 94854,94855 1sqgA 429 5.71e+00 a.79.1.3,c.66.1.38 105912,105913 1dmgA 225 5.91e+00 1dmgA c.22.1.1 31036 1m7bA 184 6.05e+00 c.37.1.8 74572 1ny1A 240 6.89e+00 c.6.2.3 86395 1udh 244 7.77e+00 3eugA c.18.1.1 31015 1fmcA 255 7.87e+00 1cydA c.2.1.2 29856 1r2qA 170 9.97e+00 c.37.1.8 96874 1z08A 170 1.08e+01 1gvdA 52 1.27e+01 a.4.1.3 83338 1aym2 261 1.35e+01 1aym2 1m5wA 243 1.37e+01 c.1.24.1 84836 1nu7D 282 1.52e+01 a.8.6.1,a.8.6.1 92191,92192 2ae2A 260 1.54e+01 1bdb c.2.1.2 29945 2ge3A 170 1.66e+01 1aisA 182 1.67e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 2b9eA 303 1.72e+01 1h4vB 421 1.74e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 2c07A 285 1.76e+01 1gz2A 142 1.81e+01 d.169.1.1 83392 1t8kA 77 1.89e+01 a.28.1.1 106666 1va0A 239 1.97e+01 2a5jA 191 2.02e+01 1zzkA 82 2.13e+01 1iv8A 720 2.15e+01 b.71.1.1,c.1.8.1 76842,76843 1f6bA 198 2.18e+01 c.37.1.8 64986 1k8rB 110 2.26e+01 d.15.1.5 72180 1vljA 407 2.27e+01 e.22.1.2 108832 1qsgA 265 2.36e+01 1eny c.2.1.2 29935 1on0A 158 2.45e+01 d.108.1.1 87095 1xe0A 114 2.46e+01 1qwgA 251 2.59e+01 c.1.27.1 96473 1l6rA 227 2.61e+01 c.108.1.10 77768 1tvdA 116 2.65e+01 1tvdA b.1.1.1 20650 2fq3A 104 2.72e+01 1akz 223 2.82e+01 3eugA c.18.1.1 31007 1kq3A 376 2.86e+01 e.22.1.2 68790 1vkmA 297 2.95e+01 c.138.1.1 108670 2ghjA 118 3.01e+01 1kafA 108 3.38e+01 d.199.1.1 68372 1nhkL 144 3.41e+01 1npk d.58.6.1 39142 1qbjA 81 3.54e+01 1qbjA a.4.5.19 16155 1qusA 322 3.54e+01 1ltm d.2.1.6 36991 1k2eA 156 3.64e+01 d.113.1.1 72010 1mgtA 174 3.79e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 2f15A 96 3.83e+01 2bt9A 90 3.85e+01 1d2vC 466 3.88e+01 1mhlC 2gf9A 189 3.91e+01 1lkdA 297 3.99e+01 d.32.1.3,d.32.1.3 78059,78060 1n7vA 555 4.01e+01 b.126.1.1 85377 1uujA 88 4.05e+01 a.221.1.1 108046 1dqpA 230 4.12e+01 1dqnA c.61.1.1 34069 1xxqA 161 4.13e+01 1nfvA 179 4.21e+01 a.25.1.1 85642 2b8nA 429 4.24e+01 1qf9A 194 4.24e+01 1zin c.37.1.1 31848 1iv3A 152 4.28e+01 d.79.5.1 76828 2cdnA 201 4.43e+01 2bmeA 186 4.43e+01 2gjsA 176 4.44e+01 1n12A 138 4.52e+01 b.2.3.2 79779 1y14A 187 4.65e+01 2fywA 267 4.65e+01 2f3yA 148 5.08e+01 1g1tA 157 5.08e+01 d.169.1.1,g.3.11.1 65104,65105 1dzlA 505 5.09e+01 1dzlA b.121.6.1 23586 1t6t1 118 5.34e+01 1mho 88 5.40e+01 1b4cA a.39.1.2 17171 1z8sA 146 5.54e+01 1up7A 417 5.68e+01 1g73C 121 5.68e+01 1g3fA g.52.1.1 45375 1go3F 107 5.68e+01 a.60.8.2 65407 1ggzA 148 5.74e+01 a.39.1.5 70176 1sdsA 117 5.82e+01 d.79.3.1 105439 1d1gA 168 5.93e+01 1d1gA c.71.1.1 34889 1f7sA 139 5.94e+01 1cof d.109.1.2 40857 1z0jA 170 5.94e+01 1gpuA 680 5.94e+01 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1sxvA 172 5.98e+01 1ydwA 362 6.07e+01 2bgsA 344 6.13e+01 1z5bA 469 6.16e+01 1jb0D 138 6.21e+01 1jb0D d.187.1.1 62823 1o4sA 389 6.24e+01 c.67.1.1 86620 1urvA 190 6.36e+01 1qopA 268 6.36e+01 2tysA c.1.2.4 28570 2czdA 208 6.37e+01 1iktA 120 6.41e+01 d.106.1.1 66188 2bl8A 103 6.46e+01 2afaA 425 6.47e+01 1zxq 192 6.50e+01 1zxq b.1.1.3,b.1.1.4 21657,21693 1ugjA 141 6.50e+01 b.41.1.3 107826 2c1xA 456 6.53e+01 1euvA 221 6.63e+01 1euvA d.3.1.7 37133 1xbiA 120 6.76e+01 1pz4A 116 6.76e+01 d.106.1.1 95400 1kgcD 206 6.77e+01 b.1.1.1,b.1.1.2 77384,77385 1w23A 360 6.79e+01 1mw7A 240 6.99e+01 e.39.1.1 79557 1fjgL 135 7.07e+01 1fjfL b.40.4.5 25346 1n7kA 234 7.19e+01 c.1.10.1 85374 1k7wA 468 7.24e+01 a.127.1.1 72130 1z5hA 780 7.33e+01 1hl2A 297 7.36e+01 c.1.10.1 83581 1widA 130 7.46e+01 1wa3A 205 7.47e+01 1t7lA 766 7.47e+01 1jyeA 349 7.56e+01 c.93.1.1 67455 2bmfA 451 7.87e+01 4tmkA 213 8.02e+01 5tmpA c.37.1.1 31930 1o3uA 135 8.06e+01 a.24.16.3 86615 1tjvA 474 8.12e+01 a.127.1.1 107054 1w1wE 121 8.18e+01 1y8xB 98 8.19e+01 1xu9A 286 8.56e+01 2cw8A 537 8.58e+01 1jq5A 370 8.64e+01 e.22.1.2 67084 1wb4A 297 8.69e+01 1viaA 175 8.74e+01 c.37.1.2 100754