# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zpwX 90 1.06e-15 1vdxA 184 2.51e-02 1vgjA 184 3.20e-02 1ydyA 356 5.95e-02 1t8qA 336 8.83e-02 c.1.18.3 106669 1oz9A 150 1.03e-01 d.92.1.15 93808 1fmcA 255 8.99e-01 1cydA c.2.1.2 29856 1v5iB 76 1.09e+00 2ge3A 170 1.67e+00 1ta9A 450 1.79e+00 1m7bA 184 2.08e+00 c.37.1.8 74572 2b9eA 303 2.26e+00 5ukdA 194 3.89e+00 1zin c.37.1.1 31851 1eyqA 222 3.92e+00 1eypA d.36.1.1 38534 1qf9A 194 4.34e+00 1zin c.37.1.1 31848 1ugjA 141 5.02e+00 b.41.1.3 107826 1wzcA 249 5.06e+00 2awdA 323 5.24e+00 1iv8A 720 5.52e+00 b.71.1.1,c.1.8.1 76842,76843 2a5dA 175 6.05e+00 1t0yA 122 6.68e+00 d.15.1.1 99066 2f02A 323 6.96e+00 1uw1A 80 7.06e+00 k.42.1.1 100069 1iv3A 152 7.88e+00 d.79.5.1 76828 2gq1A 332 8.06e+00 2bkaA 242 8.17e+00 1gz2A 142 8.96e+00 d.169.1.1 83392 1vm6A 228 9.80e+00 c.2.1.3,d.81.1.3 108876,108877 1tu5A 746 9.97e+00 1m6yA 301 1.02e+01 a.60.13.1,c.66.1.23 78716,78717 1yqgA 263 1.07e+01 1qysA 106 1.09e+01 k.41.1.1 96603 1kqpA 271 1.10e+01 c.26.2.1 72883 1ih8A 271 1.11e+01 2nsyA c.26.2.1 62377 1han 297 1.11e+01 1han d.32.1.3,d.32.1.3 38506,38507 1lkdA 297 1.11e+01 d.32.1.3,d.32.1.3 78059,78060 2bgkA 278 1.12e+01 1rlhA 173 1.32e+01 d.256.1.1 97646 1gyxA 76 1.32e+01 d.80.1.1 76387 1sqgA 429 1.33e+01 a.79.1.3,c.66.1.38 105912,105913 1vllA 334 1.34e+01 c.2.1.13 108834 1r2qA 170 1.42e+01 c.37.1.8 96874 1wvqA 167 1.46e+01 1aisA 182 1.59e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1l6rA 227 1.78e+01 c.108.1.10 77768 1omoA 322 1.79e+01 c.2.1.13 104017 2ae2A 260 1.90e+01 1bdb c.2.1.2 29945 2bcgY 206 1.92e+01 1ukvY 206 1.92e+01 c.37.1.8 107918 1zs7A 190 1.93e+01 2gjsA 176 2.01e+01 2abqA 306 2.05e+01 2cx1A 187 2.07e+01 1nmeA 146 2.16e+01 c.17.1.1 85874 1j57A 143 2.19e+01 d.221.1.1 77079 1l8aA 886 2.20e+01 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 2a5jA 191 2.33e+01 1huqA 164 2.37e+01 1byuA c.37.1.8 32020 1qu9A 128 2.38e+01 1qu9A d.79.1.1 39755 2axiA 115 2.39e+01 1td5A 202 2.52e+01 d.110.2.2 106767 1y74A 57 2.53e+01 1t4fM 110 2.56e+01 1mho 88 2.58e+01 1b4cA a.39.1.2 17171 2fq3A 104 2.59e+01 1xv5A 401 2.64e+01 1y0vH 146 2.68e+01 1jljA 189 2.68e+01 c.57.1.1 63169 1ihcA 188 2.68e+01 1di6A c.57.1.1 62379 1vl8A 267 2.70e+01 c.2.1.2 108733 2c07A 285 2.73e+01 2c9wA 169 2.84e+01 5csmA 256 2.88e+01 5csmA a.130.1.2 19494 1us5A 314 2.89e+01 c.94.1.1 99856 2bmeA 186 2.93e+01 3rabA 169 3.01e+01 1ctqA c.37.1.8 32018 1j93A 353 3.07e+01 c.1.22.1 66454 1wr2A 238 3.22e+01 1vjtA 483 3.23e+01 c.2.1.5,d.162.1.2 100833,100834 2fpmA 322 3.26e+01 1v6fA 151 3.26e+01 d.109.1.2 108395 1e79D 482 3.35e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 1f2dA 341 3.51e+01 1f2dA c.79.1.1 35298 1ughI 82 3.52e+01 1ugiA d.17.5.1 38133 2a9fA 398 3.54e+01 1tw4A 125 3.57e+01 1n0wA 243 3.60e+01 c.37.1.11 79772 1jsxA 207 3.60e+01 c.66.1.20 71846 1vjlA 164 3.60e+01 d.257.1.1 100822 1dw0A 112 3.72e+01 1dw0A a.3.1.1 15911 2ebn 289 3.83e+01 2ebn c.1.8.5 28990 2ck3D 482 3.94e+01 1rqbA 539 3.99e+01 a.5.7.2,c.1.10.5 105057,105058 1j0dA 341 4.06e+01 c.79.1.1 83902 1mxiA 160 4.08e+01 c.116.1.1 79646 1vmiA 355 4.11e+01 1n7kA 234 4.27e+01 c.1.10.1 85374 1h8eD 482 4.27e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1z08A 170 4.30e+01 1wxiA 275 4.34e+01 1r8sA 164 4.46e+01 c.37.1.8 97247 1hxhA 253 4.54e+01 c.2.1.2 76725 1xbtA 193 4.58e+01 1zowA 313 4.66e+01 1m5wA 243 4.68e+01 c.1.24.1 84836 1vkkA 154 4.72e+01 d.109.1.2 108669 1ho1A 242 4.81e+01 1ho1A c.1.24.1 61097 1u55A 188 4.83e+01 d.278.1.1 107677 1xfxO 149 4.84e+01 1fzqA 181 4.85e+01 1hurA c.37.1.8 32060 2gqrA 237 4.87e+01 1fo1A 271 5.09e+01 1fo1A c.10.2.3,d.58.7.2 30869,39213 1n9lA 109 5.20e+01 d.110.3.6 85468 1ja9A 274 5.24e+01 c.2.1.2 62817 1azo 232 5.46e+01 1azo c.52.1.14 33329 2a5hA 416 5.48e+01 1fjgM 126 5.49e+01 1fjfM a.156.1.1 16293 1vcvA 226 5.52e+01 2gf9A 189 5.61e+01 2gdjA 264 5.69e+01 1gjwA 637 5.74e+01 b.71.1.1,c.1.8.1 60582,60583 2f15A 96 5.78e+01 1xu9A 286 5.82e+01 1hy0A 466 5.83e+01 1auwA a.127.1.1 61392 1uv7A 110 5.95e+01 d.67.4.1 100040 1tjvA 474 5.96e+01 a.127.1.1 107054 1zxmA 400 6.02e+01 2c3zA 222 6.14e+01 2cmxA 118 6.23e+01 1wnfA 328 6.24e+01 1cx4A 305 6.25e+01 b.82.3.2,b.82.3.2 59099,59100 1h65A 270 6.29e+01 c.37.1.8 65640 1ytfB 53 6.30e+01 1ytfB a.32.1.1 16997 1p49A 562 6.33e+01 c.76.1.2 94089 1sdsA 117 6.34e+01 d.79.3.1 105439 1mp4A 292 6.38e+01 c.68.1.6 79376 1gvdA 52 6.43e+01 a.4.1.3 83338 1ff9A 450 6.46e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 1z5yE 149 6.56e+01 1w1oA 534 6.57e+01 d.58.32.4,d.145.1.1 109071,109072 2arhA 203 6.62e+01 1k7jA 206 6.69e+01 d.115.1.1 72103 1un3A 123 6.70e+01 d.5.1.1 99646 1xqiA 195 6.72e+01 1kq3A 376 6.73e+01 e.22.1.2 68790 1isiA 265 6.77e+01 e.4.1.1 71394 1ohvA 472 6.81e+01 c.67.1.4 93031 2czdA 208 6.82e+01 1qd9A 124 6.83e+01 1qu9A d.79.1.1 39758 1qsoA 149 6.83e+01 1qsmA d.108.1.1 40812 1t6nA 220 6.95e+01 c.37.1.19 106576 1mxgA 435 6.99e+01 b.71.1.1,c.1.8.1 85193,85194 1vheA 373 7.02e+01 b.49.3.1,c.56.5.4 100669,100670 1iab 200 7.07e+01 1iae d.92.1.8 40312 1iae 200 7.10e+01 1iae d.92.1.8 40311 1o3yA 166 7.13e+01 c.37.1.8 86618 1z3eA 132 7.30e+01 1dt9A 437 7.42e+01 1dt9A c.55.4.2,d.79.3.2,d.91.1.1 33738,39815,40257 1xwoA 465 7.46e+01 1rrmA 386 7.51e+01 e.22.1.2 105081 1wy1A 172 7.51e+01 1nh2B 53 7.55e+01 a.32.1.1 91874 1g6sA 427 7.59e+01 1eps d.68.2.2 39584 1xg5A 279 7.65e+01 1x23A 155 7.67e+01 1m1eB 81 7.67e+01 a.161.1.1 78400 1regX 122 7.69e+01 1regX d.58.27.1 39406 1pz4A 116 7.81e+01 d.106.1.1 95400 1zlmA 58 7.82e+01 1qsgA 265 7.83e+01 1eny c.2.1.2 29935 1oaoC 729 7.91e+01 e.26.1.3 86746 1aua 296 7.95e+01 1aua a.5.3.1,c.13.1.1 16290,30882 1k7wA 468 8.09e+01 a.127.1.1 72130 1mqeA 207 8.14e+01 d.113.1.1 91394 1go3F 107 8.16e+01 a.60.8.2 65407 1j3kA 280 8.18e+01 c.71.1.1 84070 1nwbA 124 8.20e+01 b.124.1.1 86296 1thg 544 8.29e+01 1thg c.69.1.17 34763 2aexA 346 8.42e+01 2cjpA 328 8.42e+01 1rypH 205 8.46e+01 d.153.1.4 41876 2dbsA 90 8.60e+01 1ekeA 230 8.63e+01 1ekeA c.55.3.1 33572 1ykdA 398 8.73e+01 1vmbA 140 8.92e+01