Best Alignments for T0376

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1xkyA/T0376-1xkyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xkyA/T0376-1xkyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.1628e-329.17e-203
1fdyA/T0376-1fdyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fdyA/T0376-1fdyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.5500e-329.10e-185 1nal3 c.1.10.1
1yxcA/T0376-1yxcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yxcA/T0376-1yxcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8425e-313.83e-189
2a6nA/T0376-2a6nA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2a6nA/T0376-2a6nA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1742e-317.58e-189
2a6lA/T0376-2a6lA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2a6lA/T0376-2a6lA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.5272e-317.83e-189
1xxxA/T0376-1xxxA-t04-global-adpstyle1.a2m 1xxxA/T0376-1xxxA-t04-global-adpstyle1.al 1.0965e-163.50e-91
1y0eA/T0376-1y0eA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y0eA/T0376-1y0eA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1154e-045.32e-36
2b4gA/T0376-2b4gA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b4gA/T0376-2b4gA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1050e-041.10e-43
1w8sA/T0376-1w8sA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1w8sA/T0376-1w8sA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.9978e-045.52e-38
1thfD/T0376-1thfD-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1thfD/T0376-1thfD-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.3210e-042.76e-31 1thfD c.1.2.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001