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Sequence Alignment and Modeling Software System
http://www.soe.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0375 SGC Target, KHK, Homo sapiens, 296 res
    • gi|55670461|pdb|1VM7|B_17:302 Chain B, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga Maritima At 2.15 A Resolution [Taxonomy]
    • gi|55670460|pdb|1VM7|A Chain A, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga Maritima At 2.15 A Resolution [Taxonomy]
    • gi|55773435|dbj|BAD71875.1|_2:295 2-keto-3-deoxy-gluconate kinase [Thermus thermophilus HB8]
    • gi|55978262|ref|YP_145318.1| 2-keto-3-deoxy-gluconate kinase [Thermus thermophilus HB8]
    • gi|48425867|pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus (Crystal Form 2) [Taxonomy]
    • gi|48425866|pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus (Crystal Form 2) [Taxonomy]
    • gi|48425865|pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus (Crystal Form 2) [Taxonomy]
    • gi|48425864|pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus (Crystal Form 2) [Taxonomy]
    • gi|48425863|pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus (Crystal Form 2) [Taxonomy]
    • gi|48425862|pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus (Crystal Form 2) [Taxonomy]
    • gi|48425861|pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus With Bound Atp [Taxonomy]
    • gi|48425860|pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus With Bound Atp [Taxonomy]
    • gi|48425859|pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus With Bound Atp [Taxonomy]
    • gi|48425858|pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus With Bound Atp [Taxonomy]
    • gi|48425857|pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus With Bound 2-Keto-3-Deoxygluconate And Adp [Taxonomy]
    • gi|48425856|pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus With Bound 2-Keto-3-Deoxygluconate And Adp [Taxonomy]
    • gi|48425855|pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus [Taxonomy]
    • gi|48425854|pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus [Taxonomy]
    • gi|56554063|pdb|1TZ6|B_25:321 Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From Salmonella Enterica Complexed With Aminoimidazole Riboside And Atp Analog [Taxonomy]
    • gi|56554062|pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From Salmonella Enterica Complexed With Aminoimidazole Riboside And Atp Analog [Taxonomy]
    • gi|56554061|pdb|1TZ3|B_25:317 Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase Complexed With Aminoimidazole Riboside [Taxonomy]
    • gi|56554060|pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase Complexed With Aminoimidazole Riboside [Taxonomy]
    • gi|56554051|pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From Salmonella Enterica [Taxonomy]
    • gi|56554050|pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From Salmonella Enterica [Taxonomy]
    • gi|1708627|sp|P45416|KDGK_DICD3_3:307 2-dehydro-3-deoxygluconokinase (2-keto-3-deoxygluconokinase) (3-deoxy-2-oxo-D-gluconate kinase) (KDG kinase) [Taxonomy]
    • gi|75854498|ref|ZP_00762188.1|_10:304 COG2870: ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Vibrio sp. Ex25]
    • gi|15623601|dbj|BAB67588.1|_3:300 311aa long hypothetical fructokinase [Sulfolobus tokodaii str. 7]
    • gi|88192770|pdb|2DCN|L Chain L, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed With 2-Keto-6- Phosphogluconate (Alpha-Furanose Form) [Taxonomy]
    • gi|88192769|pdb|2DCN|K Chain K, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed With 2-Keto-6- Phosphogluconate (Alpha-Furanose Form) [Taxonomy]
    • gi|88192768|pdb|2DCN|J Chain J, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed With 2-Keto-6- Phosphogluconate (Alpha-Furanose Form) [Taxonomy]
    • gi|88192767|pdb|2DCN|I Chain I, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed With 2-Keto-6- Phosphogluconate (Alpha-Furanose Form) [Taxonomy]
    • gi|88192766|pdb|2DCN|H Chain H, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed With 2-Keto-6- Phosphogluconate (Alpha-Furanose Form) [Taxonomy]
    • gi|88192765|pdb|2DCN|G Chain G, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed With 2-Keto-6- Phosphogluconate (Alpha-Furanose Form) [Taxonomy]
    • gi|88192764|pdb|2DCN|F Chain F, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed With 2-Keto-6- Phosphogluconate (Alpha-Furanose Form) [Taxonomy]
    • gi|88192763|pdb|2DCN|E Chain E, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed With 2-Keto-6- Phosphogluconate (Alpha-Furanose Form) [Taxonomy]
    • gi|88192762|pdb|2DCN|D Chain D, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed With 2-Keto-6- Phosphogluconate (Alpha-Furanose Form) [Taxonomy]
    • gi|88192761|pdb|2DCN|C Chain C, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed With 2-Keto-6- Phosphogluconate (Alpha-Furanose Form) [Taxonomy]
    • gi|88192760|pdb|2DCN|B Chain B, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed With 2-Keto-6- Phosphogluconate (Alpha-Furanose Form) [Taxonomy]
    • gi|88192759|pdb|2DCN|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed With 2-Keto-6- Phosphogluconate (Alpha-Furanose Form) [Taxonomy]
    • gi|15922810|ref|NP_378479.1| hypothetical fructokinase [Sulfolobus tokodaii str. 7]
    • gi|73980646|ref|XP_532903.2|_999:1296 PREDICTED: similar to EMILIN 1 precursor (Elastin microfibril interface-located protein 1) (Elastin microfibril interfacer 1) [Canis familiaris]
    • gi|78689777|ref|ZP_00854434.1|_10:304 Cytidyltransferase-related:RfaE bifunctional protein, domain I:RfaE bifunctional protein, domain II [Shewanella sp. MR-7]
    • gi|78510806|gb|EAP24171.1| Cytidyltransferase-related:RfaE bifunctional protein, domain I:RfaE bifunctional protein, domain II [Shewanella sp. MR-7]
    • gi|82497688|ref|ZP_00883218.1| Cytidyltransferase-related:RfaE bifunctional protein, domain I:RfaE bifunctional protein, domain II [Shewanella sp. MR-4]
    • gi|82404347|gb|EAP45038.1| Cytidyltransferase-related:RfaE bifunctional protein, domain I:RfaE bifunctional protein, domain II [Shewanella sp. MR-4]
    • gi|78686303|ref|ZP_00851072.1|_10:304 Cytidyltransferase-related:RfaE bifunctional protein, domain I:RfaE bifunctional protein, domain II [Shewanella sp. ANA-3]
    • gi|78505928|gb|EAP19452.1| Cytidyltransferase-related:RfaE bifunctional protein, domain I:RfaE bifunctional protein, domain II [Shewanella sp. ANA-3]
    • gi|90108697|pdb|2AFB|B_12:336 Chain B, Crystal Structure Of 2-Dehydro-3- Deoxygluconokinase (Ec 2.7.1.45) (Tm0067) From Thermotoga Maritima At 2.05 A Resolution [Taxonomy]
    • gi|90108696|pdb|2AFB|A Chain A, Crystal Structure Of 2-Dehydro-3- Deoxygluconokinase (Ec 2.7.1.45) (Tm0067) From Thermotoga Maritima At 2.05 A Resolution [Taxonomy]
    • gi|75857156|ref|ZP_00764774.1|_5:298 COG1105: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Vibrio sp. Ex25]
    • gi|11513296|pdb|1DGM|A_12:358 Chain A, Crystal Structure Of Adenosine Kinase From Toxoplasma Gondii [Taxonomy]
    • gi|21730738|pdb|1LIO|A_12:358 Chain A, Structure Of Apo T. Gondii Adenosine Kinase [Taxonomy]
    • gi|21466091|pdb|1LIK|A_12:358 Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine [Taxonomy]
    • gi|21466090|pdb|1LIJ|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Prodrug 2 7-Iodotubercidin And Amp-Pcp [Taxonomy]
    • gi|21466089|pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine 2 And Amp-Pcp [Taxonomy]
    • gi|88192020|pdb|2ABS|A_32:378 Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed With Amp-Pcp [Taxonomy]
    • gi|1749554|dbj|BAA13835.1|_13:345 similar to Saccharomyces cerevisiae hypothetical 36.4KD protein in SOD1-CPA2 intergenic region, SWISS-PROT Accession Number P47143 [Schizosaccharomyces pombe]