# List of top-scoring protein chains for T0374.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1yr0A	175	1.87e-16			
1yvoA	172	1.27e-15			
2bl1A	172	1.37e-15			
1vhsA	175	6.61e-15		d.108.1.1	100698
2ge3A	170	1.81e-14			
2fe7A	166	4.05e-14			
2ae6A	166	8.27e-14			
1tiqA	180	1.28e-12		d.108.1.1	107010
2beiA	170	3.52e-12			
1nslA	184	1.20e-11		d.108.1.1	86137
2cy2A	174	3.03e-11			
2b3uA	171	3.14e-11			
2b5gB	171	3.27e-11			
2g3tA	179	3.55e-11			
2b5gA	171	3.56e-11			
1z4eA	153	3.88e-11			
2fxfA	170	4.27e-11			
1wwzA	159	1.10e-10			
1u6mA	199	6.73e-10			
1on0A	158	1.15e-09		d.108.1.1	87095
1ufhA	180	1.32e-09		d.108.1.1	88485
1qsoA	149	1.38e-09	1qsmA	d.108.1.1	40812
2fl4A	149	1.82e-09			
1qsmA	152	1.87e-09	1qsmA	d.108.1.1	40808
1s3zA	165	2.00e-09		d.108.1.1	105250
2euiA	153	2.19e-09			
1z9uA	179	2.96e-09			
1s7kA	182	2.97e-09			
1s7fA	199	3.21e-09			
1y9kA	157	1.37e-08			
2fckA	181	2.01e-08			
1i1dA	161	2.71e-08	1i21A	d.108.1.1	61526
1i12A	160	2.72e-08	1i21A	d.108.1.1	61515
1i21A	159	2.75e-08	1i21A	d.108.1.1	61549
2fiwA	172	2.88e-08			
1vkcA	158	3.94e-08			
1yx0A	159	7.72e-08			
1mk4A	157	1.30e-07		d.108.1.1	84979
1gheA	177	1.70e-07		d.108.1.1	76222
2aj6A	159	1.78e-07			
1yreA	197	2.07e-07			
1yvkA	163	2.17e-07			
2fiaA	162	5.09e-07			
2atrA	138	6.66e-07			
1bo4A	168	9.10e-07	1bo4A	d.108.1.1	40798
1y9wA	140	1.49e-06			
2g3aA	152	2.14e-06			
2a4nA	182	3.99e-06			
1b87A	181	3.99e-06	1b87A	d.108.1.1	40797
1n71A	180	4.00e-06		d.108.1.1	85370
2c27A	315	5.72e-06			
1p0hA	318	5.73e-06		d.108.1.1	93866
2fsrA	195	7.77e-06			
1b6bA	174	8.73e-06	1cjwA	d.108.1.1	40819
1cjwA	166	8.79e-06	1cjwA	d.108.1.1	40818
1q2yA	140	8.91e-06		d.108.1.1	95655
1ib1E	200	9.84e-06	1cjwA	d.108.1.1	62137
1kuxA	207	9.84e-06		d.108.1.1	73021
1y7rA	133	1.23e-05			
5gcnA	166	1.28e-05	1yghA	d.108.1.1	40807
1qstA	160	1.28e-05	1yghA	d.108.1.1	40804
1m1dA	163	1.29e-05		d.108.1.1	78397
1qsrA	162	1.29e-05	1yghA	d.108.1.1	40805
1z4rA	168	1.52e-05			
1cm0A	168	1.66e-05	1yghA	d.108.1.1	40800
2ganA	190	2.48e-05			
1l0cA	207	2.77e-05		d.108.1.1	73393
2bswA	146	6.73e-05			
1yghA	164	1.12e-04	1yghA	d.108.1.1	40802
1xebA	150	1.06e-03			
1sqhA	312	3.25e-03		d.108.1.5	98966
1m4iA	181	6.27e-03		d.108.1.1	74457
1yk3A	210	2.65e-02			
1r57A	102	2.91e-02		d.108.1.1	97080
1bob	320	1.22e-01	1bob	d.108.1.1	40816
1rxtA	496	1.45e-01			
1mj9A	278	2.59e-01		d.108.1.1	79190
2givA	295	3.67e-01			
1mjaA	278	3.78e-01		d.108.1.1	79191
1mjbA	278	4.92e-01		d.108.1.1	79192
1fy7A	278	4.98e-01	1fy7A	d.108.1.1	40817
1iykA	392	6.53e-01		d.108.1.2,d.108.1.2	76958,76959
1yleA	342	6.76e-01			
2d4pA	141	1.59e+00			
2d4oA	141	1.67e+00			
1ux4A	410	8.49e+00		a.207.1.1	100142
1ux5A	411	8.59e+00		a.207.1.1	100144
1tuoA	464	8.66e+00			
1y64B	443	9.05e+00			
1i94H	138	1.15e+01	1seiA	d.140.1.1	61999
1mifA	115	1.31e+01	1dptA	d.80.1.3	39852
2gdbA	103	1.34e+01			
1xmtA	103	1.34e+01			
1pj5A	830	1.64e+01		b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1	94742,94743,94744,94745
1havA	217	1.75e+01	1havA	b.47.1.4	26423
1an7A	136	1.76e+01	1seiA	d.140.1.1	41465
1fjgH	138	1.78e+01	1seiA	d.140.1.1	41468
2cxvA	219	1.80e+01			
1pvmA	184	1.87e+01		d.37.1.1,d.37.1.1,g.41.13.1	95171,95172,95173
1svjA	156	1.92e+01		d.220.1.1	106049
1qa7A	217	1.92e+01	1havA	b.47.1.4	26425
1o50A	157	1.93e+01		d.37.1.1,d.37.1.1	92478,92479
1wsaA	330	2.17e+01	4pgaA	c.88.1.1	35558
1j32A	388	2.21e+01		c.67.1.1	77067
1l8tA	263	2.42e+01		d.144.1.6	73702
1j7lA	264	2.42e+01		d.144.1.6	62697
2bkkA	264	2.54e+01			
1fyc	106	2.82e+01	1fyc	b.84.1.1	28230
2aclB	244	2.83e+01			
1y8oB	128	2.91e+01			
1i8kA	107	2.91e+01		b.1.1.1	71130
1za0A	275	3.03e+01			
1iitA	232	3.38e+01		c.94.1.1	62460
1ii5A	233	3.39e+01		c.94.1.1	62412
1y81A	138	3.40e+01			
1r8oA	96	3.53e+01		b.42.4.1	104852
1cgqA	115	3.58e+01	1dptA	d.80.1.3	39843
1gifA	115	3.60e+01	1dptA	d.80.1.3	39837
1ljtA	114	3.74e+01		d.80.1.3	78053
1gd0A	122	3.77e+01	1dptA	d.80.1.3	39834
1p1gA	114	3.78e+01	1dptA	d.80.1.3	39849
1uhlB	242	3.79e+01		a.123.1.1	107850
1h1yA	228	3.80e+01		c.1.2.2	76506
1nogA	177	3.88e+01		a.25.2.2	85923
1fjcA	96	4.00e+01	1fjcA	d.58.7.1	39212
1l8wA	348	4.09e+01		a.154.1.1	73704
2gqrA	237	4.15e+01			
1vpqA	273	4.20e+01			
1kutA	230	4.33e+01		d.143.1.1	73017
1g652	196	4.44e+01			
1rypH	205	4.49e+01		d.153.1.4	41876
1iicA	422	4.61e+01	1nmtA	d.108.1.2,d.108.1.2	62422,62423
1xfsA	178	4.81e+01		d.129.3.5	109589
1ogsA	497	4.98e+01		b.71.1.2,c.1.8.3	86997,86998
2cpjA	99	5.08e+01			
1z3yA	238	5.38e+01			
2d29A	387	5.62e+01			
1apyA	162	6.07e+01	1apyA	d.153.1.5	42004
1xx2A	361	6.21e+01			
1w25A	459	6.47e+01			
1s06A	429	6.63e+01		c.67.1.4	98255
1rgzA	363	6.65e+01		e.3.1.1	97457
2ax5A	107	6.65e+01			
1onhA	364	6.66e+01		e.3.1.1	93357
1wrdA	103	6.75e+01			
2a2fX	325	6.88e+01			
1dtyA	429	6.93e+01	1dtyA	c.67.1.4	34495
2fffB	453	7.03e+01			
1s6rA	359	7.03e+01		e.3.1.1	98604
1y54A	361	7.05e+01			
2bdrA	175	7.23e+01			
1b78A	193	7.49e+01	1b78A	c.51.4.1	33221
1mgvA	429	7.57e+01		c.67.1.4	79107
1qj5A	429	7.61e+01	1dtyA	c.67.1.4	34493
1s0aA	429	7.65e+01		c.67.1.4	98263
2fymA	431	7.79e+01			
2atzA	180	7.86e+01			
1pbjA	125	7.86e+01		d.37.1.1,d.37.1.1	94414,94415
1s08A	429	8.02e+01		c.67.1.4	98259
1vlrA	350	8.07e+01		d.13.1.3,d.246.1.1	108860,108861
1s09A	429	8.20e+01		c.67.1.4	98261
1rp1	450	8.23e+01	1gpl	b.12.1.2,c.69.1.19	23646,34794
2dri	271	8.23e+01	2dri	c.93.1.1	35637
1kmzA	130	8.31e+01		d.32.1.2	72759
2cqpA	98	8.56e+01			
1a3gA	308	8.63e+01	1daaA	e.17.1.1	43286
1iyeA	309	8.63e+01		e.17.1.1	83786