# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yr0A 175 7.66e-26 2ge3A 170 4.62e-25 1yvoA 172 5.79e-25 2bl1A 172 5.83e-24 1vhsA 175 2.31e-23 d.108.1.1 100698 2ae6A 166 1.17e-22 1tiqA 180 2.52e-22 d.108.1.1 107010 2fe7A 166 2.25e-21 1nslA 184 6.33e-21 d.108.1.1 86137 2beiA 170 3.35e-20 2cy2A 174 1.51e-19 1z4eA 153 2.21e-19 1wwzA 159 5.36e-19 1u6mA 199 1.46e-18 2b5gA 171 2.98e-18 1s7kA 182 6.83e-18 2fl4A 149 1.09e-17 1s3zA 165 1.21e-17 d.108.1.1 105250 2fckA 181 1.98e-17 1gheA 177 2.44e-17 d.108.1.1 76222 1qsmA 152 9.95e-17 1qsmA d.108.1.1 40808 1yreA 197 1.39e-16 1i1dA 161 2.09e-16 1i21A d.108.1.1 61526 1i12A 160 3.21e-16 1i21A d.108.1.1 61515 1qsoA 149 7.61e-16 1qsmA d.108.1.1 40812 1y9kA 157 1.87e-15 1on0A 158 1.89e-15 d.108.1.1 87095 1vkcA 158 1.06e-14 1yvkA 163 2.50e-14 1mk4A 157 1.08e-13 d.108.1.1 84979 1cjwA 166 1.59e-13 1cjwA d.108.1.1 40818 2a4nA 182 1.67e-13 1b87A 181 3.36e-13 1b87A d.108.1.1 40797 1n71A 180 7.27e-13 d.108.1.1 85370 2c27A 315 2.05e-12 2fsrA 195 2.97e-12 1p0hA 318 5.52e-12 d.108.1.1 93866 2bswA 146 6.94e-12 1y9wA 140 1.22e-11 1q2yA 140 1.61e-11 d.108.1.1 95655 2atrA 138 1.63e-11 1qstA 160 2.22e-11 1yghA d.108.1.1 40804 1y7rA 133 3.77e-11 1yx0A 159 4.53e-11 2g3aA 152 6.86e-11 1z4rA 168 7.65e-11 2ganA 190 1.16e-10 1bo4A 168 4.78e-10 1bo4A d.108.1.1 40798 1sqhA 312 5.78e-10 d.108.1.5 98966 1xebA 150 9.25e-10 1yk3A 210 1.32e-09 1m4iA 181 2.86e-09 d.108.1.1 74457 2aj6A 159 3.10e-09 1yghA 164 4.58e-09 1yghA d.108.1.1 40802 2d4pA 141 3.74e-07 1bob 320 3.04e-06 1bob d.108.1.1 40816 1yleA 342 5.81e-05 1iicA 422 1.31e-04 1nmtA d.108.1.2,d.108.1.2 62422,62423 1fy7A 278 1.88e-04 1fy7A d.108.1.1 40817 1kzfA 230 1.17e-03 d.108.1.3 73354 2givA 295 1.49e-03 1xmtA 103 1.83e-03 1ne9A 335 2.34e-02 d.108.1.4,d.108.1.4 91839,91840 1svjA 156 4.50e-02 d.220.1.1 106049 2arhA 203 1.48e-01 1lkdA 297 1.52e-01 d.32.1.3,d.32.1.3 78059,78060 1ro5A 201 1.89e-01 d.108.1.3 105023 1han 297 1.99e-01 1han d.32.1.3,d.32.1.3 38506,38507 1afwA 393 2.18e-01 1afwA c.95.1.1,c.95.1.1 35900,35901 1zejA 293 2.47e-01 1o50A 157 2.70e-01 d.37.1.1,d.37.1.1 92478,92479 1y81A 138 3.13e-01 1y0bA 197 3.43e-01 1f1uA 323 4.06e-01 d.32.1.3,d.32.1.3 83200,83201 2d5cA 263 4.41e-01 2cy0A 263 4.90e-01 1wxdA 263 5.15e-01 1pbjA 125 5.48e-01 d.37.1.1,d.37.1.1 94414,94415 1kllA 130 8.68e-01 d.32.1.2 72720 1f1xA 322 9.16e-01 d.32.1.3,d.32.1.3 83208,83209 1edzA 320 9.90e-01 1ee9A c.2.1.7,c.58.1.2 30287,33935 1m4tA 392 1.03e+00 c.95.1.1,c.95.1.1 78617,78618 1pixA 587 1.08e+00 c.14.1.4 94708 1m3kA 392 1.10e+00 c.95.1.1,c.95.1.1 78565,78566 1qflA 389 1.10e+00 1afwA c.95.1.1,c.95.1.1 35908,35909 2b8eA 273 1.13e+00 1v2xA 194 1.19e+00 c.116.1.1 100274 1shdA 107 1.25e+00 1fmk d.93.1.1 40440 1rfmA 344 1.30e+00 c.122.1.1 97385 1vicA 262 1.41e+00 c.68.1.13 100756 1s14A 194 1.41e+00 d.122.1.2 98329 1pvmA 184 1.51e+00 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1r6xA 395 1.57e+00 b.122.1.3,c.26.1.5 97167,97168 1qysA 106 1.77e+00 k.41.1.1 96603 2f46A 156 1.79e+00 1m6kA 251 1.94e+00 e.3.1.1 78695 1oltA 457 1.96e+00 c.1.28.2 93334 1xbfA 140 2.10e+00 d.273.1.1 109538 1kw3B 292 2.12e+00 d.32.1.3,d.32.1.3 77549,77550 1lrzA 426 2.26e+00 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1vmaA 306 2.27e+00 a.24.13.1,c.37.1.10 108887,108888 1fmtA 314 2.49e+00 1fmtA b.46.1.1,c.65.1.1 25758,34174 4pfk 319 2.56e+00 3pfk c.89.1.1 35582 1ss4A 153 2.62e+00 d.32.1.6 105976 1ztuA 341 2.79e+00 1e79D 482 2.93e+00 1skyE a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 1g8fA 511 3.21e+00 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 2fyxA 143 3.28e+00 1lfwA 470 3.31e+00 c.56.5.4,d.58.19.1 77942,77943 1vk9A 151 3.46e+00 c.139.1.1 108640 1y1uA 585 3.98e+00 1fjgK 129 4.22e+00 1fjfK c.55.4.1 33733 1rkuA 206 4.26e+00 c.108.1.11 97627 1zzmA 259 4.27e+00 1dgaA 375 4.74e+00 1yagA 1dmtA 696 4.80e+00 1dmtA d.92.1.4 40296 1p5dX 463 4.87e+00 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1bu8A 452 4.93e+00 1gpl b.12.1.2,c.69.1.19 23647,34795 2pfkA 320 5.02e+00 3pfk c.89.1.1 35577 1h8eD 482 5.24e+00 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1lqpA 135 5.34e+00 d.32.1.2 78151 1nkiA 135 5.34e+00 d.32.1.2 91941 2fr1A 486 5.37e+00 1wuaA 375 5.41e+00 1k2yX 463 5.49e+00 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1qz5A 375 5.50e+00 c.55.1.1,c.55.1.1 96614,96615 1iznB 277 5.51e+00 e.43.1.2 83848 1vl8A 267 5.58e+00 c.2.1.2 108733 1gk8I 140 5.65e+00 d.73.1.1 65242 1wzlA 585 5.69e+00 1l3kA 196 5.72e+00 d.58.7.1,d.58.7.1 73539,73540 1z5vA 474 5.91e+00 1j6zA 376 5.97e+00 1yagA c.55.1.1,c.55.1.1 62667,62668 1d4xA 375 6.06e+00 1yagA c.55.1.1,c.55.1.1 59107,59108 1ir21 140 6.09e+00 1eg7A 557 6.25e+00 1eg7A c.37.1.10 32241 1zxxA 319 6.26e+00 1h75A 81 6.30e+00 1h75A c.47.1.1 60716 1pfkA 320 6.44e+00 3pfk c.89.1.1 35575 1xkfA 133 6.48e+00 1y5hA 133 6.53e+00 1gteA 1025 6.62e+00 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1aa6 715 6.68e+00 2napA b.52.2.2,c.81.1.1 26916,35324 1h7wA 1025 6.71e+00 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1shbA 104 6.87e+00 1fmk d.93.1.1 40425 1cvl 319 6.87e+00 1cvl c.69.1.18 34786 1ykdA 398 6.89e+00 1qtsA 247 6.93e+00 1qtsA b.1.10.1,d.105.1.1 22313,40789 1to6A 371 6.99e+00 c.141.1.1 107170 1jvbA 347 7.33e+00 b.35.1.2,c.2.1.1 77181,77182 1svdM 110 7.40e+00 1xtlA 175 7.47e+00 2ck3D 482 7.53e+00 1zybA 232 7.55e+00 1kyfA 247 7.57e+00 b.1.10.1,d.105.1.1 73220,73221 1mpgA 282 7.57e+00 1mpgA a.96.1.3,d.129.1.2 18747,41296 1r1hA 696 7.58e+00 d.92.1.4 104756 1l1qA 186 7.65e+00 c.61.1.1 77653 2fiqA 420 7.68e+00 1z2lA 423 7.85e+00 1ofuA 320 7.85e+00 c.32.1.1,d.79.2.1 86972,86973 2c3zA 222 8.03e+00 1on3A 523 8.31e+00 c.14.1.4,c.14.1.4 87107,87108 1tuoA 464 8.44e+00 2btfA 375 8.45e+00 1yagA c.55.1.1,c.55.1.1 33429,33430 2fxuA 375 8.49e+00 2bhmA 164 8.62e+00 1dusA 194 8.89e+00 1dusA c.66.1.4 34182 1mxgA 435 8.94e+00 b.71.1.1,c.1.8.1 85193,85194 1kpeA 126 9.06e+00 1kpf d.13.1.1 37508 2cpl 165 9.15e+00 2cpl b.62.1.1 27420 1faaA 124 9.15e+00 1erv c.47.1.1 32738 1awqA 164 9.17e+00 2cpl b.62.1.1 27461 1yndA 165 9.22e+00 1s4iA 175 9.31e+00 2aq4A 434 9.59e+00 1f9mA 112 9.72e+00 1erv c.47.1.1 32736 1pot 325 9.75e+00 1pot c.94.1.1 35807 1aop 497 9.75e+00 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 2ew2A 316 9.94e+00 1hqsA 423 9.97e+00 1iso c.77.1.1 61154 1r9dA 787 1.00e+01 c.7.1.1 104865 1d5tA 433 1.00e+01 1gnd c.3.1.3,d.16.1.6 30422,37986 2cfeA 162 1.01e+01 1awsA 164 1.01e+01 2cpl b.62.1.1 27431 1g2qA 187 1.01e+01 c.61.1.1 65117 1ni9A 338 1.01e+01 e.7.1.2 85739 2b81A 323 1.02e+01 1fsgA 233 1.03e+01 1qk3A c.61.1.1 34029 1jflA 228 1.04e+01 c.78.2.1,c.78.2.1 71656,71657 1ex7A 186 1.04e+01 1gky c.37.1.1 59537 1ys1X 320 1.05e+01 1xtmA 175 1.07e+01 2c1cA 312 1.08e+01 1zh5A 195 1.08e+01 2c07A 285 1.09e+01 1rxyA 253 1.09e+01 c.56.2.1 98065 1rypH 205 1.10e+01 d.153.1.4 41876 2btoA 473 1.10e+01 1vdnA 162 1.12e+01 1kpf 126 1.13e+01 1kpf d.13.1.1 37507 1ojrA 274 1.14e+01 c.74.1.1 93147 1qq4A 198 1.15e+01 1qq4A b.47.1.1 25768 1yemA 179 1.16e+01 1s57A 153 1.17e+01 1e42A 258 1.18e+01 1e42A b.1.10.1,d.105.1.1 22316,40792 1ssxA 198 1.18e+01 b.47.1.1 98978 1v5vA 401 1.21e+01 1npk 154 1.21e+01 1npk d.58.6.1 39099 1z7dA 433 1.21e+01 1uehA 253 1.22e+01 c.101.1.1 99259 2awaA 390 1.22e+01 1v93A 296 1.25e+01 c.1.23.1 100532 1h1nA 305 1.25e+01 c.1.8.3 70855 1k8qA 377 1.26e+01 c.69.1.6 72177 1s2oA 244 1.26e+01 1wnaA 131 1.27e+01 1gsa 316 1.28e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 2gwdA 449 1.32e+01 1qcxA 359 1.32e+01 1qcxA b.80.1.2 28028 1igs 248 1.32e+01 1a53 c.1.2.4 28565 1j8fA 323 1.34e+01 1j8fA c.31.1.5 62738 2f5gA 133 1.36e+01 1j7dA 145 1.36e+01 1jatB d.20.1.1 62680 1vb3A 428 1.37e+01 1yphE 97 1.39e+01 2gptA 523 1.39e+01 1gky 187 1.41e+01 1gky c.37.1.1 31839 1g8yA 279 1.42e+01 1g8yA c.37.1.11 32302 1tljA 213 1.43e+01 d.282.1.1 107126 1a53 247 1.43e+01 1a53 c.1.2.4 28564 1nlfA 279 1.43e+01 c.37.1.11 85850 1tygB 87 1.44e+01 d.15.3.2 107455 2ax3A 502 1.45e+01 2cxaA 256 1.46e+01 2a4dA 160 1.46e+01 1cr1A 296 1.47e+01 1cr1A c.37.1.11 32286 1lx7A 253 1.48e+01 c.56.2.1 74329 1nm2A 317 1.49e+01 c.19.1.1,d.58.23.1 80654,80655 2awpA 198 1.50e+01 1xsnA 335 1.51e+01 1qcsA 211 1.54e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 1v9nA 360 1.55e+01 1dik 874 1.56e+01 1dik c.1.12.2,c.8.1.1,d.142.1.5 29304,30702,41572 1hh1A 143 1.58e+01 1gefA c.52.1.18 61036 1hdr 244 1.58e+01 1dhr c.2.1.2 29837 1ex2A 189 1.58e+01 1ex2A c.51.4.2 33225 1ha1 184 1.59e+01 1ha1 d.58.7.1,d.58.7.1 39147,39148 1nofA 383 1.60e+01 b.71.1.2,c.1.8.3 92020,92021 1lw6I 64 1.60e+01 d.40.1.1 74294 1uf5A 303 1.61e+01 d.160.1.2 107808 1zu0A 529 1.62e+01 1erzA 303 1.62e+01 1erzA d.160.1.2 59498 1dhr 241 1.63e+01 1dhr c.2.1.2 29832 1nxuA 333 1.64e+01 c.122.1.1 86389 2b18A 164 1.66e+01 1crzA 403 1.67e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 1b34B 118 1.68e+01 1b34B b.38.1.1 24797 1zhhB 242 1.69e+01 1uwdA 103 1.69e+01 1q7bA 244 1.70e+01 c.2.1.2 96026 1j8yF 297 1.71e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 2acaA 189 1.73e+01 1g8lA 411 1.73e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1vdmA 153 1.75e+01 1zu4A 320 1.76e+01 1w5fA 353 1.76e+01 2ax4A 198 1.76e+01 1to2I 64 1.77e+01 2erfA 209 1.78e+01 1pmhX 185 1.81e+01 b.18.1.18 104193 1jatA 155 1.82e+01 1u9aA d.20.1.1 62818 2f57A 317 1.85e+01 1pq4A 291 1.85e+01 c.92.2.2 94995 1zfjA 491 1.86e+01 1ak5 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 1eulA 994 1.86e+01 1eulA 2bh9A 489 1.92e+01 1rtqA 299 1.93e+01 c.56.5.4 97819 1e19A 314 1.93e+01 1b7bA c.73.1.1 34967 1w2xA 758 1.94e+01 c.14.1.4,c.14.1.4 109134,109135 2a1rA 430 1.95e+01 1k4nA 192 1.98e+01 d.32.1.5 72059 1pj5A 830 1.99e+01 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 2fb5A 205 2.00e+01 1st9A 143 2.02e+01 c.47.1.10 98987 1vmhA 144 2.04e+01 1plq 258 2.06e+01 1plq d.131.1.2,d.131.1.2 41388,41389 1o13A 136 2.09e+01 c.55.5.1 80762 2g30A 258 2.10e+01 2a50B 168 2.12e+01 1o4rA 108 2.12e+01 d.93.1.1 92469 1ds1A 324 2.14e+01 1drtA b.82.2.2 28127 2dbyA 368 2.14e+01 2fmpA 335 2.15e+01 1xuqA 212 2.16e+01 1w96A 554 2.21e+01 2gw2A 198 2.23e+01 1ucnA 152 2.27e+01 d.58.6.1 99183 1ve1A 304 2.30e+01 1uyrA 737 2.30e+01 c.14.1.4,c.14.1.4 100188,100189 1im5A 180 2.33e+01 c.33.1.3 66211 1k8kD 300 2.33e+01 d.198.2.1,d.198.2.1 68309,68310 2bhvA 246 2.36e+01 1m1nA 491 2.37e+01 c.92.2.3 78417 1wd6A 123 2.39e+01 1nrfA 262 2.40e+01 e.3.1.1 92086 1zkkA 167 2.42e+01 1vefA 395 2.42e+01 1gg6C 97 2.49e+01 5ptp 1wyzA 242 2.49e+01 1cseI 71 2.55e+01 1egpA d.40.1.1 38559 1zmaA 118 2.55e+01 1vjqA 79 2.56e+01 k.43.1.1 100830 2bj7A 138 2.58e+01 1j7lA 264 2.59e+01 d.144.1.6 62697 1su4A 994 2.59e+01 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 98993,98994,98995,98996 1faeA 629 2.66e+01 1fce a.102.1.2 18837 2bd0A 244 2.71e+01 1wdkC 390 2.71e+01 c.95.1.1,c.95.1.1 109258,109259 1g9gA 629 2.71e+01 a.102.1.2 83279 1i6wA 181 2.71e+01 1i6wA c.69.1.18 61859 1ispA 181 2.71e+01 c.69.1.18 76778 1u14A 172 2.74e+01 c.51.4.3 107579 1bpyA 335 2.74e+01 1bpyA a.60.6.1,a.60.12.1,d.218.1.2 17980,75819,75820 1qipA 183 2.76e+01 1qipA d.32.1.1 38470 1puiA 210 2.77e+01 c.37.1.8 88292 1g79A 218 2.80e+01 1ci0A b.45.1.1 25752 1g4wR 383 2.82e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 1t0aA 159 2.82e+01 1xe7A 203 2.83e+01 1czaN 917 2.84e+01 1qhaA c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1jj2L 194 2.85e+01 1ffkI d.12.1.2 63097 1gpjA 404 2.88e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1tv9A 335 2.89e+01 1pea 385 2.91e+01 1pea c.93.1.1 35662 2fhxA 246 3.00e+01 1feuA 206 3.00e+01 1feuA b.53.1.1 59801 1rypC 244 3.02e+01 1rypC d.153.1.4 41934 1o5oA 221 3.02e+01 c.61.1.1 92509 2d37A 176 3.03e+01 1dkgA 197 3.05e+01 1dkgA b.73.1.1,h.1.9.1 27812,45626 1zwyA 185 3.07e+01 1qauA 112 3.08e+01 1qauA b.36.1.1 24779 2d93A 134 3.09e+01 2bcqA 335 3.11e+01 1h6dA 433 3.11e+01 c.2.1.3,d.81.1.5 65656,65657 1kl7A 514 3.12e+01 c.79.1.1 72678 1cx4A 305 3.12e+01 b.82.3.2,b.82.3.2 59099,59100 1w94A 156 3.14e+01 1zy9A 564 3.15e+01 1nrgA 261 3.18e+01 b.45.1.1 80694 1wz3A 96 3.19e+01 1vpbA 451 3.19e+01 1vp8A 201 3.20e+01 1hdcA 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